RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 APOA5Q6Q788 366 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 TBC1D10CQ8IV04 446 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 PRSS33Q8NF86 280 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 FBXO18Q8NFZ0 1043 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 NEDD1Q8NHV4 660 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 MRPS27Q92552 414 aaKnown RBP12.64□□□□□ -0.39
SHMT2-216ENST00000554975 DHX38Q92620 1227 aaKnown RBP12.64□□□□□ -0.39
SHMT2-216ENST00000554975 C17orf80Q9BSJ5 609 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 ZBED2Q9BTP6 218 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 KCNH6Q9H252 994 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 RTEL1Q9NZ71 1219 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 CACNA1AO00555 2505 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 RALGAPA2Q2PPJ7 1873 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 ZFHX2Q9C0A1 2572 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 MYO15AQ9UKN7 3530 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 RBM47A0AV96 593 aaKnown RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 CCDC69A6NI79 296 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 C19orf67A6NJJ6 358 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 GOLGA8AA7E2F4 631 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 NBNO60934 754 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 TTLL1O95922 423 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 LIG1P18858 919 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 CPT1AP50416 773 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 ALDH5A1P51649 535 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 STAT2P52630 851 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 DHX8Q14562 1220 aaKnown RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 SF3A1Q15459 793 aaKnown RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 ZRSR1Q15695 479 aaKnown RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 TKFCQ3LXA3 575 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 NFRKBQ6P4R8 1299 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 NSMFQ6X4W1 530 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 NFXL1Q6ZNB6 911 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 MFSD6Q6ZSS7 791 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 KCTD1Q719H9 257 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 TRIM22Q8IYM9 498 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 NCOA5Q9HCD5 579 aaKnown RBP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 ANAPC4Q9UJX5 808 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 STX8Q9UNK0 236 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 MTMR7Q9Y216 660 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.63□□□□□ -0.39
SHMT2-216ENST00000554975 PLXNA3P51805 1871 aa12.63□□□□□ -0.39
SHMT2-216ENST00000554975 PTPRZ1P23471 2315 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 PLIN4Q96Q06 1357 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 ADCY5O95622 1261 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 FDX1P10109 184 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 IRS1P35568 1242 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 ME1P48163 572 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 CHMP4BP1P59074 171 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 BFSP2Q13515 415 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 GNL2Q13823 731 aaKnown RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 BAATQ14032 418 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 PTGISQ16647 500 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 PPP4R3BQ5MIZ7 849 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 MYSM1Q5VVJ2 828 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 GDF6Q6KF10 455 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 NAP1L5Q96NT1 182 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 USP28Q96RU2 1077 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 RAD9AQ99638 391 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 NAT10Q9H0A0 1025 aaKnown RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 GPHNQ9NQX3 736 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 ANO10Q9NW15 660 aa12.62□□□□□ -0.39
SHMT2-216ENST00000554975 TFIP11Q9UBB9 837 aaKnown RBP12.62□□□□□ -0.39
SHMT2-216ENST00000554975 B4E1Z4 1266 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 GOLGA6L19H0YKK7 550 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 ORC4O43929 436 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 NMT2O60551 498 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 OFD1O75665 1012 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 CXCL10P02778 98 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 IKQ13123 557 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-216ENST00000554975 SAFBQ15424 915 aaKnown RBP eCLIP12.61□□□□□ -0.39
SHMT2-216ENST00000554975 TCEAL5Q5H9L2 206 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 IER5LQ5T953 404 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 ADALQ6DHV7 355 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 FAM173BQ6P4H8 233 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 CNKSR3Q6P9H4 555 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 LRRC8DQ7L1W4 858 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 FAM160B2Q86V87 743 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 CEP57L1Q8IYX8 460 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 FSIP1Q8NA03 581 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 FBXO22Q8NEZ5 403 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 AFAP1L1Q8TED9 768 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 PGBD1Q96JS3 809 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 MUTYHQ9UIF7 546 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 PRR12Q9ULL5 1215 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 NOD1Q9Y239 953 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 SLC12A7Q9Y666 1083 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 MRVI1Q9Y6F6 885 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 NEDD4P46934 1319 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 COL4A6Q14031 1691 aa12.61□□□□□ -0.39
SHMT2-216ENST00000554975 A6NJR5 290 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 NFIBO00712 420 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 IFIT3O14879 490 aaKnown RBP12.6□□□□□ -0.39
SHMT2-216ENST00000554975 ARIH2O95376 493 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 ADD1P35611 737 aaKnown RBP12.6□□□□□ -0.39
SHMT2-216ENST00000554975 TPM4P67936 248 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 PTPN11Q06124 597 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-216ENST00000554975 MBTPS1Q14703 1052 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 WTAPQ15007 396 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 TRAF7Q6Q0C0 670 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 SLC30A10Q6XR72 485 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms