RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 TECP42680 631 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 PRCPP42785 496 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 CACNB3P54284 484 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 EIF6P56537 245 aaKnown RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 ICA1Q05084 483 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 SPAG1Q07617 926 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 AP3B2Q13367 1082 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 CALCRLQ16602 461 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 CCDC96Q2M329 555 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 TMEM266Q2M3C6 531 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 QRICH1Q2TAL8 776 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 KCTD1Q719H9 257 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 FILIP1Q7Z7B0 1213 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 CLEC10AQ8IUN9 316 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 ZSCAN29Q8IWY8 852 aaPredicted RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 ADSSL1Q8N142 457 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 CCAR2Q8N163 923 aaKnown RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 LARGE2Q8N3Y3 721 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 OGFOD1Q8N543 542 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 GIMAP8Q8ND71 665 aaPredicted RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 MYRIPQ8NFW9 859 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 FBXO41Q8TF61 875 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 ZNF837Q96EG3 531 aaPredicted RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 CALML4Q96GE6 196 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 DHTKD1Q96HY7 919 aaPredicted RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 AMNQ9BXJ7 453 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 LRRC27Q9C0I9 530 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 PDGFDQ9GZP0 370 aaPredicted RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 DEFB129Q9H1M3 183 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 SAMSN1Q9NSI8 373 aaKnown RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 TMEM260Q9NX78 707 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 ADD3Q9UEY8 706 aaKnown RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 TMX2Q9Y320 296 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 R3HCC1Q9Y3T6 440 aaKnown RBP6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 PAXBP1Q9Y5B6 917 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 ITIH6Q6UXX5 1313 aa6.75□□□□□ -1.33
VIPAS39-204ENST00000553576 WDR81Q562E7 1941 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 A0A1W2PRG0 241 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 DYNC1I1O14576 645 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 MEIS2O14770 477 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CCP110O43303 1012 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 STX10O60499 249 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 NDUFB10O96000 172 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 GH2P01242 217 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CYP3A4P08684 503 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 PLCG1P19174 1290 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 RPS12P25398 132 aaKnown RBP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CASP1P29466 404 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CIITAP33076 1130 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 SLC16A2P36021 539 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 JAG1P78504 1218 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CXCL9Q07325 125 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 PAK1Q13153 545 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 PSMD2Q13200 908 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 RRP1BQ14684 758 aaKnown RBP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CDC37Q16543 378 aaPredicted RBP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 Q4G0T1 1027 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 TMEM119Q4V9L6 283 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 SPECC1LQ69YQ0 1117 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 SV2BQ7L1I2 683 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 DEFB132Q7Z7B7 95 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 FBXO11Q86XK2 927 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 KRTAP1-3Q8IUG1 177 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 NIM1KQ8IY84 436 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 LRRC15Q8TF66 581 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 NOC3LQ8WTT2 800 aaKnown RBP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CHURC1Q8WUH1 139 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 STAMQ92783 540 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 HAS1Q92839 578 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CCDC47Q96A33 483 aaKnown RBP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 ACDQ96AP0 544 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 CSRNP1Q96S65 589 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 TRIM9Q9C026 710 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 SLC24A3Q9HC58 644 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 ARHGEF10LQ9HCE6 1279 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 KCNMB3Q9NPA1 279 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 BLOC1S4Q9NUP1 217 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 LRWD1Q9UFC0 647 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 PCDHA1Q9Y5I3 950 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 POLR2AP24928 1970 aaKnown RBP6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 MYH11P35749 1972 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 LTBP3Q9NS15 1303 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 SYNRGQ9UMZ2 1314 aa6.74□□□□□ -1.33
VIPAS39-204ENST00000553576 PARP14Q460N5 1801 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 KRBA1A5PL33 1030 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 PP2D1A8MPX8 630 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TMEM232C9JQI7 657 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 GPR25O00155 361 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TRIM66O15016 1216 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 ARHGAP6O43182 974 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 SLC37A4O43826 429 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 RAD17O75943 681 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 FURINP09958 794 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 CCNE1P24864 410 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 CAP2P40123 477 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TXKP42681 527 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 ZNF280AP59817 542 aaPredicted RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 ATP2B2Q01814 1243 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 EHHADHQ08426 723 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms