RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 BTG3Q14201 252 aaPredicted RBP15.06■□□□□ 0
VPS29-211ENST00000553128 PGM5Q15124 567 aa15.06■□□□□ 0
VPS29-211ENST00000553128 FAM26DQ5JW98 314 aa15.06■□□□□ 0
VPS29-211ENST00000553128 RUFY4Q6ZNE9 571 aa15.06■□□□□ 0
VPS29-211ENST00000553128 ZNF589Q86UQ0 364 aaPredicted RBP15.06■□□□□ 0
VPS29-211ENST00000553128 VSIG10LQ86VR7 867 aa15.06■□□□□ 0
VPS29-211ENST00000553128 EFHBQ8N7U6 833 aa15.06■□□□□ 0
VPS29-211ENST00000553128 PNMA1Q8ND90 353 aa15.06■□□□□ 0
VPS29-211ENST00000553128 SPPL3Q8TCT6 385 aa15.06■□□□□ 0
VPS29-211ENST00000553128 RPGRIP1Q96KN7 1286 aa15.06■□□□□ 0
VPS29-211ENST00000553128 MLXIPQ9HAP2 919 aa15.06■□□□□ 0
VPS29-211ENST00000553128 RWDD3Q9Y3V2 267 aa15.06■□□□□ 0
VPS29-211ENST00000553128 MRPL42Q9Y6G3 142 aaKnown RBP15.06■□□□□ 0
VPS29-211ENST00000553128 LPIN1Q14693 890 aa15.05■□□□□ -0
VPS29-211ENST00000553128 MFSD6Q6ZSS7 791 aa15.05■□□□□ -0
VPS29-211ENST00000553128 STOX1Q6ZVD7 989 aa15.05■□□□□ -0
VPS29-211ENST00000553128 LMBR1Q8WVP7 490 aa15.05■□□□□ -0
VPS29-211ENST00000553128 LINC01599Q8WXQ3 324 aa15.05■□□□□ -0
VPS29-211ENST00000553128 EHMT1Q9H9B1 1298 aa15.05■□□□□ -0
VPS29-211ENST00000553128 CCDC171Q6TFL3 1326 aa15.04■□□□□ -0
VPS29-211ENST00000553128 SALL3Q9BXA9 1300 aa15.04■□□□□ -0
VPS29-211ENST00000553128 DHX16O60231 1041 aaKnown RBP15.04■□□□□ -0
VPS29-211ENST00000553128 DGKIO75912 1065 aa15.04■□□□□ -0
VPS29-211ENST00000553128 MX1P20591 662 aa15.04■□□□□ -0
VPS29-211ENST00000553128 ARHGAP4P98171 946 aa15.04■□□□□ -0
VPS29-211ENST00000553128 FOXK2Q01167 660 aa15.04■□□□□ -0
VPS29-211ENST00000553128 GHRHRQ02643 423 aa15.04■□□□□ -0
VPS29-211ENST00000553128 MGAT3Q09327 533 aa15.04■□□□□ -0
VPS29-211ENST00000553128 KCNV1Q6PIU1 500 aa15.04■□□□□ -0
VPS29-211ENST00000553128 DGKHQ86XP1 1220 aa15.04■□□□□ -0
VPS29-211ENST00000553128 KLHL23Q8NBE8 558 aa15.04■□□□□ -0
VPS29-211ENST00000553128 VN1R2Q8NFZ6 395 aa15.04■□□□□ -0
VPS29-211ENST00000553128 PHF7Q9BWX1 381 aaPredicted RBP15.04■□□□□ -0
VPS29-211ENST00000553128 PLVAPQ9BX97 442 aa15.04■□□□□ -0
VPS29-211ENST00000553128 HELLSQ9NRZ9 838 aa15.04■□□□□ -0
VPS29-211ENST00000553128 TGFB3P10600 412 aa15.03■□□□□ -0
VPS29-211ENST00000553128 SEMA3FQ13275 785 aa15.03■□□□□ -0
VPS29-211ENST00000553128 PAN2Q504Q3 1202 aaKnown RBP15.03■□□□□ -0
VPS29-211ENST00000553128 CYFIP1Q7L576 1253 aa15.03■□□□□ -0
VPS29-211ENST00000553128 CRIPAKQ8N1N5 446 aa15.03■□□□□ -0
VPS29-211ENST00000553128 STAG2Q8N3U4 1231 aa15.03■□□□□ -0
VPS29-211ENST00000553128 POF1BQ8WVV4 589 aa15.03■□□□□ -0
VPS29-211ENST00000553128 P2RX5Q93086 422 aa15.03■□□□□ -0
VPS29-211ENST00000553128 GPR20Q99678 358 aa15.03■□□□□ -0
VPS29-211ENST00000553128 DNAH14Q0VDD8 3507 aa15.03■□□□□ -0
VPS29-211ENST00000553128 KIAA1671Q9BY89 1806 aa15.03■□□□□ -0
VPS29-211ENST00000553128 ZMYM6O95789 1325 aa15.02■□□□□ -0
VPS29-211ENST00000553128 PER2O15055 1255 aa15.02■□□□□ -0
VPS29-211ENST00000553128 ICAM3P32942 547 aa15.02■□□□□ -0
VPS29-211ENST00000553128 GATMP50440 423 aa15.02■□□□□ -0
VPS29-211ENST00000553128 MCMDC2Q4G0Z9 681 aa15.02■□□□□ -0
VPS29-211ENST00000553128 ASPRV1Q53RT3 343 aa15.02■□□□□ -0
VPS29-211ENST00000553128 UTP14CQ5TAP6 766 aaKnown RBP15.02■□□□□ -0
VPS29-211ENST00000553128 RTN4RL1Q86UN2 441 aaPredicted RBP15.02■□□□□ -0
VPS29-211ENST00000553128 AMNQ9BXJ7 453 aa15.02■□□□□ -0
VPS29-211ENST00000553128 USP26Q9BXU7 913 aa15.02■□□□□ -0
VPS29-211ENST00000553128 KAT14Q9H8E8 782 aa15.02■□□□□ -0
VPS29-211ENST00000553128 PTPRZ1P23471 2315 aaPredicted RBP15.01□□□□□ -0.01
VPS29-211ENST00000553128 PRR23AA6NEV1 266 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 PROB1E7EW31 1015 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 NOP56O00567 594 aaKnown RBP15.01□□□□□ -0.01
VPS29-211ENST00000553128 PPFIA3O75145 1194 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 KDM4AO75164 1064 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 GNAT1P11488 350 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 CCND2P30279 289 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 MRPS9P82933 396 aaKnown RBP15.01□□□□□ -0.01
VPS29-211ENST00000553128 NMIQ13287 307 aaPredicted RBP15.01□□□□□ -0.01
VPS29-211ENST00000553128 PTPN21Q16825 1174 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 SLC35G1Q2M3R5 365 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 FBXO47Q5MNV8 452 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 FCHSD1Q86WN1 690 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 ENAHQ8N8S7 591 aaPredicted RBP15.01□□□□□ -0.01
VPS29-211ENST00000553128 SUSD6Q92537 303 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 ESR2Q92731 530 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 EVI5LQ96CN4 794 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 ZBTB10Q96DT7 871 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 AGO3Q9H9G7 860 aaKnown RBP15.01□□□□□ -0.01
VPS29-211ENST00000553128 DOCK5Q9H7D0 1870 aa15.01□□□□□ -0.01
VPS29-211ENST00000553128 TTC3P53804 2025 aa15□□□□□ -0.01
VPS29-211ENST00000553128 CACNA1AO00555 2505 aa15□□□□□ -0.01
VPS29-211ENST00000553128 MYH6P13533 1939 aa15□□□□□ -0.01
VPS29-211ENST00000553128 PARP1P09874 1014 aaKnown RBP15□□□□□ -0.01
VPS29-211ENST00000553128 SP100P23497 879 aaPredicted RBP15□□□□□ -0.01
VPS29-211ENST00000553128 SP4Q02446 784 aa15□□□□□ -0.01
VPS29-211ENST00000553128 METTL7BQ6UX53 244 aa15□□□□□ -0.01
VPS29-211ENST00000553128 PPP2R3CQ969Q6 453 aa15□□□□□ -0.01
VPS29-211ENST00000553128 MTMR8Q96EF0 704 aa15□□□□□ -0.01
VPS29-211ENST00000553128 RIPOR3Q96MK2 946 aa15□□□□□ -0.01
VPS29-211ENST00000553128 RTEL1Q9NZ71 1219 aa15□□□□□ -0.01
VPS29-211ENST00000553128 TRPC6Q9Y210 931 aa15□□□□□ -0.01
VPS29-211ENST00000553128 PCDHB15Q9Y5E8 787 aa15□□□□□ -0.01
VPS29-211ENST00000553128 PCDHA1Q9Y5I3 950 aa15□□□□□ -0.01
VPS29-211ENST00000553128 TRIM6-TRIM34B2RNG4 842 aa14.99□□□□□ -0.01
VPS29-211ENST00000553128 GALR2O43603 387 aaPredicted RBP14.99□□□□□ -0.01
VPS29-211ENST00000553128 PCP11498 1178 aaKnown RBP14.99□□□□□ -0.01
VPS29-211ENST00000553128 CD52P31358 61 aa14.99□□□□□ -0.01
VPS29-211ENST00000553128 CMTR2Q8IYT2 770 aaKnown RBP14.99□□□□□ -0.01
VPS29-211ENST00000553128 ATP8B4Q8TF62 1192 aa14.99□□□□□ -0.01
VPS29-211ENST00000553128 DNAJB3Q8WWF6 145 aa14.99□□□□□ -0.01
VPS29-211ENST00000553128 ZSCAN10Q96SZ4 725 aaPredicted RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms