RNA–Protein interactions for RNA: ENST00000550692.1

BRF1-218, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 4

Gene BRF1, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-218	ENST00000550692	PITPNM1	O00562	1244 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	CDKL5	O76039	1030 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	IQCF3	P0C7M6	154 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	SMIM10L2A	P0DMW4	78 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	SMIM10L2B	P0DMW5	78 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	BFSP2	Q13515	415 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	BECN1	Q14457	450 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	NPY5R	Q15761	445 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	NIPA1	Q7RTP0	329 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	WNT8B	Q93098	351 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	RNPEP	Q9H4A4	650 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	JPH1	Q9HDC5	661 aa	Predicted RBP	12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	GJB4	Q9NTQ9	266 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	SLC9A2	Q9UBY0	812 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	PCDHA4	Q9UN74	947 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	KCNJ14	Q9UNX9	436 aa		12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	RBM19	Q9Y4C8	960 aa	Known RBP	12.8	□□□□□ -0.36
BRF1-218	ENST00000550692	C17orf102	A2RUQ5	167 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	RBAK-RBAKDN	I3L0D1	243 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692		M0R2N6	131 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	DDX39A	O00148	427 aa	Known RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	CD2BP2	O95400	341 aa	Known RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	FGB	P02675	491 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	FDPS	P14324	419 aa	Known RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	HOXC8	P31273	242 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	CIITA	P33076	1130 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	ANP32A	P39687	249 aa	Known RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	PSRC1	Q6PGN9	363 aa	Predicted RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	DEFB128	Q7Z7B8	93 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	HSCB	Q8IWL3	235 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	RPUSD2	Q8IZ73	545 aa	Known RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	BLID	Q8IZY5	108 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	RETREG2	Q8NC44	543 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	CAGE1	Q8TC20	777 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	ATP6V0A1	Q93050	837 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	GTF3C6	Q969F1	213 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	TMX3	Q96JJ7	454 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	PCYT2	Q99447	389 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	SDF4	Q9BRK5	362 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	SETD4	Q9NVD3	440 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	CXXC1	Q9P0U4	656 aa	Predicted RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	ORC3	Q9UBD5	711 aa	Predicted RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	ZNF215	Q9UL58	517 aa	Predicted RBP	12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	NFASC	O94856	1347 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	STK36	Q9NRP7	1315 aa		12.79	□□□□□ -0.36
BRF1-218	ENST00000550692	DHX15	O43143	795 aa	Known RBP	12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	TREH	O43280	583 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	CCNE2	O96020	404 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	CKB	P12277	381 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	MARK3	P27448	753 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	ACTR2	P61160	394 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	ST3GAL1	Q11201	340 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	PTK7	Q13308	1070 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	GPNMB	Q14956	572 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	TRIM71	Q2Q1W2	868 aa	Known RBP	12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	PRR16	Q569H4	304 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	RASIP1	Q5U651	963 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	FAM109B	Q6ICB4	259 aa	Predicted RBP	12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	GPR153	Q6NV75	609 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692		Q7L0L9	218 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	OTOP2	Q7RTS6	562 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	FAM177A1	Q8N128	213 aa	Predicted RBP	12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	DAGLB	Q8NCG7	672 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	TET1	Q8NFU7	2136 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	TBCK	Q8TEA7	893 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	HERVK_113	Q902F9	699 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	GLG1	Q92896	1179 aa		12.78	□□□□□ -0.36
BRF1-218	ENST00000550692	GRXCR1	A8MXD5	290 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692		K7ELQ4	463 aa	Predicted RBP	12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	IPO5	O00410	1097 aa	Known RBP	12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	JAK2	O60674	1132 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	LGR5	O75473	907 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	SELP	P16109	830 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	USP11	P51784	963 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	RBL2	Q08999	1139 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	ZNF618	Q5T7W0	954 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	GALNT17	Q6IS24	598 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	LRRC8D	Q7L1W4	858 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	SERINC5	Q86VE9	423 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	CCDC155	Q8N6L0	562 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	NSUN7	Q8NE18	718 aa	Known RBP	12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	AFAP1L1	Q8TED9	768 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	LENG9	Q96B70	501 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	ZNF577	Q9BSK1	485 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	PHF20	Q9BVI0	1012 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	SMARCAD1	Q9H4L7	1026 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	ERAP1	Q9NZ08	941 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	EMSY	Q7Z589	1322 aa		12.77	□□□□□ -0.37
BRF1-218	ENST00000550692	TANC1	Q9C0D5	1861 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	KAT6A	Q92794	2004 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	ATG7	O95352	703 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	RFC2	P35250	354 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	ADAM17	P78536	824 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	SMAD3	P84022	425 aa	Known RBP	12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	SET	Q01105	290 aa	Predicted RBP	12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	TRAF7	Q6Q0C0	670 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	DEFB123	Q8N688	67 aa		12.76	□□□□□ -0.37
BRF1-218	ENST00000550692	SLC17A8	Q8NDX2	589 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 23 ms