RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 J3QL48 77 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 VWA5AO00534 786 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 WDR46O15213 610 aaKnown RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 IDH1O75874 414 aaKnown RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 POLR3DP05423 398 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 CYP2D6P10635 497 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 CYP2C9P11712 490 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 AKR1B1P15121 316 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 TIMP2P16035 220 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 PHKA2P46019 1235 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 ICA1Q05084 483 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 ZNF394Q53GI3 561 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 ARMCX2Q7L311 632 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 TMCO2Q7Z6W1 182 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 HERC6Q8IVU3 1022 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 MSL3Q8N5Y2 521 aaKnown RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 MAGEB6Q8N7X4 407 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 DHX38Q92620 1227 aaKnown RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 DDX11Q96FC9 970 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 SLC9A7Q96T83 725 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 GRIP2Q9C0E4 1043 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 DNAJC25Q9H1X3 360 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 FAM13BQ9NYF5 915 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 PKD2L1Q9P0L9 805 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 MTUS1Q9ULD2 1270 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 TMX2Q9Y320 296 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 MYO15AQ9UKN7 3530 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 TRIP12Q14669 1992 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 ZNF536O15090 1300 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 TECTAO75443 2155 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 NEFLP07196 543 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 IRS1P35568 1242 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 IDH3AP50213 366 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 SNRNP48Q6IEG0 339 aaKnown RBP7.83□□□□□ -1.16
LIMA1-204ENST00000549064 TMEM179Q6ZVK1 233 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 NOL8Q76FK4 1167 aaKnown RBP7.83□□□□□ -1.16
LIMA1-204ENST00000549064 EPS8L3Q8TE67 593 aaKnown RBP7.83□□□□□ -1.16
LIMA1-204ENST00000549064 PPP1R13LQ8WUF5 828 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 DYNLL2Q96FJ2 89 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 SUSD3Q96L08 255 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 FRMD6Q96NE9 622 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 KATNBL1Q9H079 304 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 ABHD16BQ9H3Z7 469 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 TRMT13Q9NUP7 481 aaKnown RBP7.83□□□□□ -1.16
LIMA1-204ENST00000549064 PPP1R9AQ9ULJ8 1098 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 DDX49Q9Y6V7 483 aaKnown RBP7.83□□□□□ -1.16
LIMA1-204ENST00000549064 KMT2EQ8IZD2 1858 aa7.83□□□□□ -1.16
LIMA1-204ENST00000549064 H3BQ06 376 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 RPLP1P05386 114 aaKnown RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 PFKMP08237 780 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 ACTN1P12814 892 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 TNFAIP2Q03169 654 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 MTX1Q13505 466 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 FSCN1Q16658 493 aaKnown RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 CCDC158Q5M9N0 1113 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 FAM83BQ5T0W9 1011 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 TMEM63BQ5T3F8 832 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 POTEGQ6S5H5 508 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 DPH6Q7L8W6 267 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 TLK2Q86UE8 772 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 CCDC144CPQ8IYA2 1237 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 CPXCR1Q8N123 301 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 SNIP1Q8TAD8 396 aaKnown RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 INSM2Q96T92 566 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 NUP88Q99567 741 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 RIOK1Q9BRS2 568 aaKnown RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 ALDH8A1Q9H2A2 487 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-204ENST00000549064 ANTXR1Q9H6X2 564 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 SUGCTQ9HAC7 445 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 FAM86C1Q9NVL1 165 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 MCM9Q9NXL9 1143 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 DCHS1Q96JQ0 3298 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 DMDP11532 3685 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 ATG2AQ2TAZ0 1938 aa7.82□□□□□ -1.16
LIMA1-204ENST00000549064 PLXNA3P51805 1871 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 PNMA6EA0A0J9YXQ4 647 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 KIF28PB7ZC32 967 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 DYNC1LI2O43237 492 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 GFRA3O60609 400 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 TNFRSF21O75509 655 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 CABYRO75952 493 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 HMGB1P09429 215 aaKnown RBP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 EEF2P13639 858 aaKnown RBP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 DNAJA1P31689 397 aaKnown RBP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 COPB2P35606 906 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 NKX3-2P78367 333 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 ZP2Q05996 745 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 G3BP1Q13283 466 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 TNNI3KQ59H18 835 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 MEIOBQ8N635 442 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 PHOSPHO2Q8TCD6 241 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 SDR42E1Q8WUS8 393 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 CCDC74AQ96AQ1 378 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 TEX13BQ9BXU2 312 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 OSBPL7Q9BZF2 842 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 FTOQ9C0B1 505 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 C12orf49Q9H741 205 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 SH2D4AQ9H788 454 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 SMC4Q9NTJ3 1288 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 TLR7Q9NYK1 1049 aaKnown RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms