RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 GPR20Q99678 358 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 C11orf84Q9BUA3 381 aaPredicted RBP14.89□□□□□ -0.03
USP28-212ENST00000544750 EHMT1Q9H9B1 1298 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 TELO2Q9Y4R8 837 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 ADGRA3Q8IWK6 1321 aa14.89□□□□□ -0.03
USP28-212ENST00000544750 TRIM6-TRIM34B2RNG4 842 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 SPATA31C2B4DYI2 1134 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 KLRF2D3W0D1 207 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 ADAM15Q13444 863 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 CLUL1Q15846 466 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 METTL7BQ6UX53 244 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 TRIM50Q86XT4 487 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 PRSS33Q8NF86 280 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 LMBR1Q8WVP7 490 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 EDAQ92838 391 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 MSLNLQ96KJ4 702 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 POP1Q99575 1024 aaKnown RBP14.88□□□□□ -0.03
USP28-212ENST00000544750 RIOX1Q9H6W3 641 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 RWDD3Q9Y3V2 267 aa14.88□□□□□ -0.03
USP28-212ENST00000544750 FNDC1Q4ZHG4 1894 aaPredicted RBP14.88□□□□□ -0.03
USP28-212ENST00000544750 GCOM1H8Y6P7 765 aaPredicted RBP14.87□□□□□ -0.03
USP28-212ENST00000544750 LINC01565O15544 149 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 EYA4O95677 639 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 MMP1P03956 469 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 POLR2MP0CAP2 368 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 GNAT1P11488 350 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 MGAT3Q09327 533 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 HDAC1Q13547 482 aaPredicted RBP14.87□□□□□ -0.03
USP28-212ENST00000544750 NEDD9Q14511 834 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 CYFIP1Q7L576 1253 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 CRIPAKQ8N1N5 446 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 EXOC6Q8TAG9 804 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 DSCC1Q9BVC3 393 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 ZBTB47Q9UFB7 747 aaPredicted RBP14.87□□□□□ -0.03
USP28-212ENST00000544750 CACNA1HO95180 2353 aa14.87□□□□□ -0.03
USP28-212ENST00000544750 NOP56O00567 594 aaKnown RBP14.86□□□□□ -0.03
USP28-212ENST00000544750 ENPP3O14638 875 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 CYTH3O43739 400 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 STAM2O75886 525 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 LPIN1Q14693 890 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 IFIT1BQ5T764 474 aaKnown RBP14.86□□□□□ -0.03
USP28-212ENST00000544750 FCHSD1Q86WN1 690 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 P2RX5Q93086 422 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 RILPL2Q969X0 211 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 SNX27Q96L92 541 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 PIGSQ96S52 555 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 PLVAPQ9BX97 442 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 KRT23Q9C075 422 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 ALG13Q9NP73 1137 aaKnown RBP14.86□□□□□ -0.03
USP28-212ENST00000544750 CD207Q9UJ71 328 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 CFAP54Q96N23 3096 aa14.86□□□□□ -0.03
USP28-212ENST00000544750 STXBP3O00186 592 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 DGKIO75912 1065 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 GHRP10912 638 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 ARHGAP4P98171 946 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 GNPTABQ3T906 1256 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 IER5LQ5T953 404 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 RUFY4Q6ZNE9 571 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 LINC01599Q8WXQ3 324 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 SENP7Q9BQF6 1050 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 CLEC1BQ9P126 229 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 PLAGL2Q9UPG8 496 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 NRCAMQ92823 1304 aa14.85□□□□□ -0.03
USP28-212ENST00000544750 PLXNA3P51805 1871 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 LOC730098B7Z3J9 87 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 FIBPO43427 364 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 DNAJB1P25685 340 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 AAMPQ13685 434 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 BTG3Q14201 252 aaPredicted RBP14.84□□□□□ -0.03
USP28-212ENST00000544750 CBX2Q14781 532 aaPredicted RBP14.84□□□□□ -0.03
USP28-212ENST00000544750 GRM4Q14833 912 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 IMMTQ16891 758 aaKnown RBP14.84□□□□□ -0.03
USP28-212ENST00000544750 FBXO47Q5MNV8 452 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 TAF2Q6P1X5 1199 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 CWC27Q6UX04 472 aaKnown RBP14.84□□□□□ -0.03
USP28-212ENST00000544750 TRIM67Q6ZTA4 783 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 CYB5R4Q7L1T6 521 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 HOMER1Q86YM7 354 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 SPPL3Q8TCT6 385 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 UBAC1Q9BSL1 405 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 LNPKQ9C0E8 428 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 OSBPL3Q9H4L5 887 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 IGFLR1Q9H665 355 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 CNNM2Q9H8M5 875 aa14.84□□□□□ -0.03
USP28-212ENST00000544750 ZNF215Q9UL58 517 aaPredicted RBP14.84□□□□□ -0.03
USP28-212ENST00000544750 MYO10Q9HD67 2058 aa14.83□□□□□ -0.03
USP28-212ENST00000544750 MBLAC1A4D2B0 266 aaPredicted RBP14.83□□□□□ -0.04
USP28-212ENST00000544750 ITGB1P05556 798 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 TCF15Q12870 199 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 COASYQ13057 564 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 TRAF1Q13077 416 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 NAALADL2Q58DX5 795 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 UTP14CQ5TAP6 766 aaKnown RBP14.83□□□□□ -0.04
USP28-212ENST00000544750 ADGRD2Q7Z7M1 963 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 RTN4RL1Q86UN2 441 aaPredicted RBP14.83□□□□□ -0.04
USP28-212ENST00000544750 PLEKHM2Q8IWE5 1019 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 SMRP1Q8NCR6 262 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 RTEL1Q9NZ71 1219 aa14.83□□□□□ -0.04
USP28-212ENST00000544750 MRPL42Q9Y6G3 142 aaKnown RBP14.83□□□□□ -0.04
USP28-212ENST00000544750 EVPLQ92817 2033 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms