RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMEM31Q5JXX7 168 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 PCNX4Q63HM2 1172 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 CATIPQ7Z7H3 387 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 SRBD1Q8N5C6 995 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 FAM122AQ96E09 287 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 IFIH1Q9BYX4 1025 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 RC3H2Q9HBD1 1191 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 PKD2L1Q9P0L9 805 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 RBM8AQ9Y5S9 174 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 KAT6AQ92794 2004 aa17.83■□□□□ 0.45
CLSTN3-213ENST00000541953 ERICH2A1L162 156 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 H3BNC9 293 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 GHRP10912 638 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 ITGB5P18084 799 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 MARK3P27448 753 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 IRX6P78412 446 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 MGAT3Q09327 533 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 GPM6BQ13491 265 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 UBE2SQ16763 222 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 TMEM192Q8IY95 271 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 SMARCC2Q8TAQ2 1214 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 NEK9Q8TD19 979 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 LINC01599Q8WXQ3 324 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 MAP4K1Q92918 833 aa17.83■□□□□ 0.44
CLSTN3-213ENST00000541953 GSTTP1A0A1W2PQM5 241 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 PI4K2BG5E9Z4 385 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 PIK3CDO00329 1044 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 CAND2O75155 1236 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 STAM2O75886 525 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 TCF7P36402 384 aaPredicted RBP17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 LPIN1Q14693 890 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 PTCRAQ6ISU1 281 aaPredicted RBP17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 BANK1Q8NDB2 785 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 LOXHD1Q8IVV2 1947 aa17.82■□□□□ 0.44
CLSTN3-213ENST00000541953 GRXCR2A6NFK2 248 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 SH2B2O14492 632 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 GPR37L1O60883 481 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 CSPG5O95196 566 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 TRAF1Q13077 416 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 COL19A1Q14993 1142 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 SART3Q15020 963 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 MARCH8Q5T0T0 291 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 GJD3Q8N144 294 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 RRP36Q96EU6 259 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 SENP7Q9BQF6 1050 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 LRRC2Q9BYS8 371 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 EHMT1Q9H9B1 1298 aa17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 ZNF215Q9UL58 517 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-213ENST00000541953 PRC1O43663 620 aa17.8■□□□□ 0.44
CLSTN3-213ENST00000541953 DDAH1O94760 285 aa17.8■□□□□ 0.44
CLSTN3-213ENST00000541953 LTBRP36941 435 aa17.8■□□□□ 0.44
CLSTN3-213ENST00000541953 RUFY2Q8WXA3 655 aa17.8■□□□□ 0.44
CLSTN3-213ENST00000541953 PCYT2Q99447 389 aa17.8■□□□□ 0.44
CLSTN3-213ENST00000541953 TTC3P53804 2025 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 GRM6O15303 877 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 HOXD11P31277 338 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 CTNNB1P35222 781 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 GTF2F1P35269 517 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 DLX2Q07687 328 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 PPFIA1Q13136 1202 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 GRIK4Q16099 956 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 TIGD5Q53EQ6 642 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 CTCFLQ8NI51 663 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 DNAJB3Q8WWF6 145 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 SAMD11Q96NU1 681 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 MAP3K14Q99558 947 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 LSG1Q9H089 658 aaKnown RBP17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 AGO3Q9H9G7 860 aaKnown RBP17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 UBIAD1Q9Y5Z9 338 aa17.79■□□□□ 0.44
CLSTN3-213ENST00000541953 ADGRA3Q8IWK6 1321 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 NRCAMQ92823 1304 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 MUC6Q6W4X9 2439 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 POTEB3A0JP26 581 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 MBLAC1A4D2B0 266 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 GNAT1P11488 350 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 IGBP1P78318 339 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 FBXO47Q5MNV8 452 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 TYW1BQ6NUM6 668 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 POTEBQ6S5H4 581 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 EP400NLQ6ZTU2 488 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 CCDC82Q8N4S0 544 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 CYP2W1Q8TAV3 490 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 TRAPPC12Q8WVT3 735 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 APBB2Q92870 758 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 CUL5Q93034 780 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 GPRASP2Q96D09 838 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 PABPC5Q96DU9 382 aaKnown RBP17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 IL17RAQ96F46 866 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 PGBD1Q96JS3 809 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 NSUN3Q9H649 340 aaKnown RBP17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 TUBE1Q9UJT0 475 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 CDY2AQ9Y6F7 541 aa17.78■□□□□ 0.44
CLSTN3-213ENST00000541953 ENPP3O14638 875 aa17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 SSTR3P32745 418 aaPredicted RBP17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 HYAL1Q12794 435 aa17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 CAMK1Q14012 370 aa17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 CLUL1Q15846 466 aa17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 PTPROQ16827 1216 aa17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 RPAINQ86UA6 219 aa17.77■□□□□ 0.44
CLSTN3-213ENST00000541953 RTN4RL1Q86UN2 441 aaPredicted RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms