RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 SUGP1Q8IWZ8 645 aaKnown RBP13.73□□□□□ -0.21
COPA-205ENST00000541366 ESR2Q92731 530 aa13.73□□□□□ -0.21
COPA-205ENST00000541366 APBB2Q92870 758 aa13.73□□□□□ -0.21
COPA-205ENST00000541366 CLP1Q92989 425 aaKnown RBP13.73□□□□□ -0.21
COPA-205ENST00000541366 KAT14Q9H8E8 782 aa13.73□□□□□ -0.21
COPA-205ENST00000541366 VPS13AQ96RL7 3174 aa13.73□□□□□ -0.21
COPA-205ENST00000541366 BAZ2BQ9UIF8 2168 aaKnown RBP13.73□□□□□ -0.21
COPA-205ENST00000541366 TTC3P53804 2025 aa13.73□□□□□ -0.21
COPA-205ENST00000541366 RIF1Q5UIP0 2472 aaKnown RBP13.72□□□□□ -0.21
COPA-205ENST00000541366 ZMYM6O95789 1325 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 LOC730098B7Z3J9 87 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 ENPP3O14638 875 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 EYA4O95677 639 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 MMP1P03956 469 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 ADAM17P78536 824 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 ARHGAP4P98171 946 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 BTG3Q14201 252 aaPredicted RBP13.72□□□□□ -0.21
COPA-205ENST00000541366 ASPRV1Q53RT3 343 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 FAM26DQ5JW98 314 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 UTP14CQ5TAP6 766 aaKnown RBP13.72□□□□□ -0.21
COPA-205ENST00000541366 KCNV1Q6PIU1 500 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 RUFY4Q6ZNE9 571 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 CYFIP1Q7L576 1253 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 RBM23Q86U06 439 aaKnown RBP13.72□□□□□ -0.21
COPA-205ENST00000541366 FCHSD1Q86WN1 690 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 FBXL6Q8N531 539 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 ENAHQ8N8S7 591 aaPredicted RBP13.72□□□□□ -0.21
COPA-205ENST00000541366 LMBR1Q8WVP7 490 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 AMNQ9BXJ7 453 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 PLAGL2Q9UPG8 496 aa13.72□□□□□ -0.21
COPA-205ENST00000541366 MRPL42Q9Y6G3 142 aaKnown RBP13.72□□□□□ -0.21
COPA-205ENST00000541366 KIAA1671Q9BY89 1806 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 KAT6AQ92794 2004 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 CCDC171Q6TFL3 1326 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 DCHS1Q96JQ0 3298 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 SPDYE4A6NLX3 237 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 TRIM6-TRIM34B2RNG4 842 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 B4E1Z4 1266 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 NOP56O00567 594 aaKnown RBP13.71□□□□□ -0.21
COPA-205ENST00000541366 CAND2O75155 1236 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 GLP2RO95838 553 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 ITGB1P05556 798 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 PARP1P09874 1014 aaKnown RBP13.71□□□□□ -0.21
COPA-205ENST00000541366 TGFB3P10600 412 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 RBM10P98175 930 aaKnown RBP13.71□□□□□ -0.21
COPA-205ENST00000541366 SP4Q02446 784 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 GHRHRQ02643 423 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 SEMA3FQ13275 785 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 LPIN1Q14693 890 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 SMRP1Q8NCR6 262 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 ZNF689Q96CS4 500 aaPredicted RBP13.71□□□□□ -0.21
COPA-205ENST00000541366 ZSCAN10Q96SZ4 725 aaPredicted RBP13.71□□□□□ -0.21
COPA-205ENST00000541366 BARX2Q9UMQ3 279 aaPredicted RBP13.71□□□□□ -0.21
COPA-205ENST00000541366 PCDHA1Q9Y5I3 950 aa13.71□□□□□ -0.21
COPA-205ENST00000541366 PCP11498 1178 aaKnown RBP13.7□□□□□ -0.22
COPA-205ENST00000541366 CCND2P30279 289 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 NRIP1P48552 1158 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 MRPS9P82933 396 aaKnown RBP13.7□□□□□ -0.22
COPA-205ENST00000541366 CBX2Q14781 532 aaPredicted RBP13.7□□□□□ -0.22
COPA-205ENST00000541366 SLC35G1Q2M3R5 365 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 IQCA1Q86XH1 822 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 SPPL3Q8TCT6 385 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 LINC01599Q8WXQ3 324 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 RPGRIP1Q96KN7 1286 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 GPR20Q99678 358 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 USP26Q9BXU7 913 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 RNF41Q9H4P4 317 aaPredicted RBP13.7□□□□□ -0.22
COPA-205ENST00000541366 EHMT1Q9H9B1 1298 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 RTEL1Q9NZ71 1219 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 RWDD3Q9Y3V2 267 aa13.7□□□□□ -0.22
COPA-205ENST00000541366 USP15Q9Y4E8 981 aaPredicted RBP13.7□□□□□ -0.22
COPA-205ENST00000541366 H0Y858 1186 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 DGKIO75912 1065 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 PDGFBP01127 241 aaPredicted RBP13.69□□□□□ -0.22
COPA-205ENST00000541366 GNAT1P11488 350 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 GATMP50440 423 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 PDE1AP54750 535 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 MGAT3Q09327 533 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 PAN2Q504Q3 1202 aaKnown RBP13.69□□□□□ -0.22
COPA-205ENST00000541366 ANKRD45Q5TZF3 282 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 RTN4RL1Q86UN2 441 aaPredicted RBP13.69□□□□□ -0.22
COPA-205ENST00000541366 HOMER1Q86YM7 354 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 EFHBQ8N7U6 833 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 KLHL23Q8NBE8 558 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 ATOH1Q92858 354 aaPredicted RBP13.69□□□□□ -0.22
COPA-205ENST00000541366 ZBTB10Q96DT7 871 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 ASIC4Q96FT7 647 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 PLVAPQ9BX97 442 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 TLR9Q9NR96 1032 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 ZSWIM5Q9P217 1185 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 PLXNA3P51805 1871 aa13.69□□□□□ -0.22
COPA-205ENST00000541366 KLRF2D3W0D1 207 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 ZNF213O14771 459 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 PER2O15055 1255 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 ZBTB5O15062 677 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 PPFIA3O75145 1194 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 AVPR2P30518 371 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 SIGLEC14Q08ET2 396 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 COASYQ13057 564 aa13.68□□□□□ -0.22
COPA-205ENST00000541366 FBXO47Q5MNV8 452 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms