RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ZNF200P98182 395 aaPredicted RBP16.19■□□□□ 0.18
USP28-209ENST00000540925 PTK7Q13308 1070 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 BFSP2Q13515 415 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 ME3Q16798 604 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 SERINC5Q86VE9 423 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 DAGLBQ8NCG7 672 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 BICD2Q8TD16 824 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 RASGRP4Q8TDF6 673 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 AFAP1L1Q8TED9 768 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 SEPT1Q8WYJ6 367 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 LENG9Q96B70 501 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 KIF2CQ99661 725 aa16.19■□□□□ 0.18
USP28-209ENST00000540925 TRIP12Q14669 1992 aaPredicted RBP16.18■□□□□ 0.18
USP28-209ENST00000540925 LGR5O75473 907 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 PFKMP08237 780 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 RFC2P35250 354 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 CPLX2Q6PUV4 134 aaKnown RBP16.18■□□□□ 0.18
USP28-209ENST00000540925 PCYT2Q99447 389 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 SLKQ9H2G2 1235 aaPredicted RBP16.18■□□□□ 0.18
USP28-209ENST00000540925 RNPEPQ9H4A4 650 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 JPH1Q9HDC5 661 aaPredicted RBP16.18■□□□□ 0.18
USP28-209ENST00000540925 PKD2L1Q9P0L9 805 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 CXXC1Q9P0U4 656 aaPredicted RBP16.18■□□□□ 0.18
USP28-209ENST00000540925 SLC9A2Q9UBY0 812 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 PCDHA4Q9UN74 947 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 EMSYQ7Z589 1322 aa16.18■□□□□ 0.18
USP28-209ENST00000540925 CDKL5O76039 1030 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 ATG7O95352 703 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 CKBP12277 381 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 NEK4P51957 841 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 SP4Q02446 784 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 RPUSD2Q8IZ73 545 aaKnown RBP16.17■□□□□ 0.18
USP28-209ENST00000540925 CCDC155Q8N6L0 562 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 GTF3C6Q969F1 213 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 ZNF215Q9UL58 517 aaPredicted RBP16.17■□□□□ 0.18
USP28-209ENST00000540925 NOD1Q9Y239 953 aa16.17■□□□□ 0.18
USP28-209ENST00000540925 TET1Q8NFU7 2136 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 IGKV6D-21A0A0A0MT36 114 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 C17orf102A2RUQ5 167 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 CCNE2O96020 404 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 FGBP02675 491 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 CXCL10P02778 98 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 FDPSP14324 419 aaKnown RBP16.16■□□□□ 0.18
USP28-209ENST00000540925 SELPP16109 830 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 NLRP5P59047 1200 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 ACTR2P61160 394 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 ST3GAL1Q11201 340 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 UTP14CQ5TAP6 766 aaKnown RBP16.16■□□□□ 0.18
USP28-209ENST00000540925 GALNT17Q6IS24 598 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 Q7L0L9 218 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 PLA2G4DQ86XP0 818 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 RETREG2Q8NC44 543 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 LMBR1Q8WVP7 490 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 PHF20Q9BVI0 1012 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 MTMR10Q9NXD2 777 aa16.16■□□□□ 0.18
USP28-209ENST00000540925 VCANP13611 3396 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.15■□□□□ 0.18
USP28-209ENST00000540925 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.15■□□□□ 0.18
USP28-209ENST00000540925 IPO5O00410 1097 aaKnown RBP16.15■□□□□ 0.18
USP28-209ENST00000540925 TREHO43280 583 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 RBM25P49756 843 aaKnown RBP16.15■□□□□ 0.18
USP28-209ENST00000540925 USP11P51784 963 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 SETQ01105 290 aaPredicted RBP16.15■□□□□ 0.18
USP28-209ENST00000540925 MBTPS1Q14703 1052 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 LRRC8DQ7L1W4 858 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 BLIDQ8IZY5 108 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 DEFB123Q8N688 67 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 NECAB1Q8N987 351 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 ATP6V0A1Q93050 837 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 SDF4Q9BRK5 362 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 SETD4Q9NVD3 440 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 ERAP1Q9NZ08 941 aa16.15■□□□□ 0.18
USP28-209ENST00000540925 CYP3A7-CYP3A51PA0A087WV96 503 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 MBLAC1A4D2B0 266 aaPredicted RBP16.14■□□□□ 0.17
USP28-209ENST00000540925 NBNO60934 754 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 DTNBO60941 627 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 PARNO95453 639 aaKnown RBP16.14■□□□□ 0.17
USP28-209ENST00000540925 CYP3A7P24462 503 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 ZNF76P36508 570 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 ZNF618Q5T7W0 954 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 ABHD15Q6UXT9 468 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 OTOP2Q7RTS6 562 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 PLPPR4Q7Z2D5 763 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 DEFB128Q7Z7B8 93 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 NSUN7Q8NE18 718 aaKnown RBP16.14■□□□□ 0.17
USP28-209ENST00000540925 MBOAT7Q96N66 472 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 TTYH1Q9H313 450 aaPredicted RBP16.14■□□□□ 0.17
USP28-209ENST00000540925 SMARCAD1Q9H4L7 1026 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 NRCAMQ92823 1304 aa16.14■□□□□ 0.17
USP28-209ENST00000540925 TMEM265A0A087WTH1 108 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 CAND2O75155 1236 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 TCTN1Q2MV58 587 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 MARCH8Q5T0T0 291 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 RPAINQ86UA6 219 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 TBCKQ8TEA7 893 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 GUCD1Q96NT3 240 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 C22orf23Q9BZE7 217 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 GJB4Q9NTQ9 266 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 TBC1D22BQ9NU19 505 aa16.13■□□□□ 0.17
USP28-209ENST00000540925 KCNJ14Q9UNX9 436 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms