RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 LLPHQ9BRT6 129 aaKnown RBP10.49□□□□□ -0.73
SNHG1-215ENST00000540904 ZNF577Q9BSK1 485 aa10.49□□□□□ -0.73
SNHG1-215ENST00000540904 HIPK3Q9H422 1215 aa10.49□□□□□ -0.73
SNHG1-215ENST00000540904 TUT1Q9H6E5 874 aaKnown RBP10.49□□□□□ -0.73
SNHG1-215ENST00000540904 HDAC6Q9UBN7 1215 aa10.49□□□□□ -0.73
SNHG1-215ENST00000540904 SLC9A2Q9UBY0 812 aa10.49□□□□□ -0.73
SNHG1-215ENST00000540904 NOD1Q9Y239 953 aa10.49□□□□□ -0.73
SNHG1-215ENST00000540904 GSTTP1A0A1W2PQM5 241 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 IPO5O00410 1097 aaKnown RBP10.48□□□□□ -0.73
SNHG1-215ENST00000540904 EDIL3O43854 480 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 GABBR2O75899 941 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 CD2BP2O95400 341 aaKnown RBP10.48□□□□□ -0.73
SNHG1-215ENST00000540904 CIITAP33076 1130 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 KRT2P35908 639 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 ACTR2P61160 394 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 FPGSQ05932 587 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 INF2Q27J81 1249 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 GDF6Q6KF10 455 aaPredicted RBP10.48□□□□□ -0.73
SNHG1-215ENST00000540904 SESTD1Q86VW0 696 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 GLG1Q92896 1179 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 NOC4LQ9BVI4 516 aaKnown RBP10.48□□□□□ -0.73
SNHG1-215ENST00000540904 BRMS1Q9HCU9 246 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 GTF2IRD1Q9UHL9 959 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 ZNF215Q9UL58 517 aaPredicted RBP10.48□□□□□ -0.73
SNHG1-215ENST00000540904 NFASCO94856 1347 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 UMODL1Q5DID0 1318 aa10.48□□□□□ -0.73
SNHG1-215ENST00000540904 TDP2O95551 362 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 MMP1P03956 469 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 SMIM10L2AP0DMW4 78 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 SMIM10L2BP0DMW5 78 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 CSF2RAP15509 400 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 MARK3P27448 753 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 CCL23P55773 120 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 HMGN5P82970 282 aaKnown RBP10.47□□□□□ -0.73
SNHG1-215ENST00000540904 ZNF200P98182 395 aaPredicted RBP10.47□□□□□ -0.73
SNHG1-215ENST00000540904 GUCY1B3Q02153 619 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 NR5A1Q13285 461 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 LETM2Q2VYF4 491 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 MFSD5Q6N075 450 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 PIK3AP1Q6ZUJ8 805 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 TDHQ8IZJ6 230 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 TMEM199Q8N511 208 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 FAM184AQ8NB25 1140 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 IL27Q8NEV9 243 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 LENG9Q96B70 501 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 TMX3Q96JJ7 454 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 TBC1D22BQ9NU19 505 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 TCEAL9Q9UHQ7 104 aa10.47□□□□□ -0.73
SNHG1-215ENST00000540904 A0A1W2PPC1 479 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 C17orf102A2RUQ5 167 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 BTBD18B2RXH4 712 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 DHX15O43143 795 aaKnown RBP10.46□□□□□ -0.73
SNHG1-215ENST00000540904 CCNE2O96020 404 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 MCM2P49736 904 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 EPHB4P54760 987 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 HIC1Q14526 733 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 EARS2Q5JPH6 523 aaKnown RBP10.46□□□□□ -0.73
SNHG1-215ENST00000540904 KRT40Q6A162 431 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 DIS3L2Q8IYB7 885 aaKnown RBP10.46□□□□□ -0.73
SNHG1-215ENST00000540904 C8orf76Q96K31 380 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 CTAGE1Q96RT6 745 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 RNPEPQ9H4A4 650 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 SMARCAD1Q9H4L7 1026 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 AZI2Q9H6S1 392 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 SETD4Q9NVD3 440 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 ERAP1Q9NZ08 941 aa10.46□□□□□ -0.73
SNHG1-215ENST00000540904 DDX25Q9UHL0 483 aaKnown RBP10.46□□□□□ -0.73
SNHG1-215ENST00000540904 CEP290O15078 2479 aa10.46□□□□□ -0.74
SNHG1-215ENST00000540904 SCN10AQ9Y5Y9 1956 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 EMSYQ7Z589 1322 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 CYP3A7-CYP3A51PA0A087WV96 503 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 FAM205CA6NFA0 338 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 BACH1O14867 736 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 MSH4O15457 936 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 CCNT1O60563 726 aaKnown RBP10.45□□□□□ -0.74
SNHG1-215ENST00000540904 GAS7O60861 476 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 LGR5O75473 907 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 CYP3A7P24462 503 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 PPIGQ13427 754 aaKnown RBP eCLIP10.45□□□□□ -0.74
SNHG1-215ENST00000540904 BFSP2Q13515 415 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 SAFBQ15424 915 aaKnown RBP eCLIP10.45□□□□□ -0.74
SNHG1-215ENST00000540904 SHHQ15465 462 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 Q4G0T1 1027 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 C9orf50Q5SZB4 431 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 NEK8Q86SG6 692 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 RETREG2Q8NC44 543 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 DHX38Q92620 1227 aaKnown RBP10.45□□□□□ -0.74
SNHG1-215ENST00000540904 TNFRSF25Q93038 417 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 ATP6V0A1Q93050 837 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 GJA10Q969M2 543 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 SCLYQ96I15 445 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 PCYT2Q99447 389 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 WNT8AQ9H1J5 351 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 SAMM50Q9Y512 469 aa10.45□□□□□ -0.74
SNHG1-215ENST00000540904 TREHO43280 583 aa10.44□□□□□ -0.74
SNHG1-215ENST00000540904 CHMP2AO43633 222 aa10.44□□□□□ -0.74
SNHG1-215ENST00000540904 SLC37A4O43826 429 aa10.44□□□□□ -0.74
SNHG1-215ENST00000540904 ATG7O95352 703 aa10.44□□□□□ -0.74
SNHG1-215ENST00000540904 IQCF3P0C7M6 154 aa10.44□□□□□ -0.74
SNHG1-215ENST00000540904 ACRP10323 421 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms