RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 XBP1P17861 261 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 FXR1P51114 621 aaKnown RBP eCLIP20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 USP11P51784 963 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 FOSBP53539 338 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 CCL23P55773 120 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 FPGSQ05932 587 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 SHHQ15465 462 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 C16orf59Q7L2K0 433 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 DHX38Q92620 1227 aaKnown RBP20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 SDF4Q9BRK5 362 aa20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 LAMA2P24043 3122 aaKnown RBP20.8■□□□□ 0.92
SNRPA1-203ENST00000540017 DDX39AO00148 427 aaKnown RBP20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 IPO5O00410 1097 aaKnown RBP20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 SMIM10L2AP0DMW4 78 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 SMIM10L2BP0DMW5 78 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 ACTR2P61160 394 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 INF2Q27J81 1249 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 EARS2Q5JPH6 523 aaKnown RBP20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 KRT25Q7Z3Z0 450 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 ZNF577Q9BSK1 485 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 RNPEPQ9H4A4 650 aa20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 SH2B1Q9NRF2 756 aaPredicted RBP20.79■□□□□ 0.92
SNRPA1-203ENST00000540017 FAM205CA6NFA0 338 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 RBAK-RBAKDNI3L0D1 243 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 SOX1O00570 391 aaPredicted RBP20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 TDP2O95551 362 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 HOXC8P31273 242 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 SETQ01105 290 aaPredicted RBP20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 NR5A1Q13285 461 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 NONOQ15233 471 aaKnown RBP eCLIP20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 WNT8BQ93098 351 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 VWCEQ96DN2 955 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 SCLYQ96I15 445 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 LLPHQ9BRT6 129 aaKnown RBP20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 NOD1Q9Y239 953 aa20.78■□□□□ 0.92
SNRPA1-203ENST00000540017 TRIP12Q14669 1992 aaPredicted RBP20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 MSH4O15457 936 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 ST18O60284 1047 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 LGR5O75473 907 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 ATG7O95352 703 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 KRT40Q6A162 431 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 TMEM199Q8N511 208 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 TNFRSF25Q93038 417 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 GJA10Q969M2 543 aa20.77■□□□□ 0.92
SNRPA1-203ENST00000540017 CYP3A7-CYP3A51PA0A087WV96 503 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 MMP1P03956 469 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 ACRP10323 421 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 CYP3A7P24462 503 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 MARK3P27448 753 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 PPIGQ13427 754 aaKnown RBP eCLIP20.76■□□□□ 0.912e-11■■□□□ 12.5
SNRPA1-203ENST00000540017 PIK3AP1Q6ZUJ8 805 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 MBOAT7Q96N66 472 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.76■□□□□ 0.912e-8■□□□□ 10.7
SNRPA1-203ENST00000540017 SETD4Q9NVD3 440 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 ZNF215Q9UL58 517 aaPredicted RBP20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 EMSYQ7Z589 1322 aa20.76■□□□□ 0.91
SNRPA1-203ENST00000540017 CCDC194A0A1B0GVG4 234 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 C17orf102A2RUQ5 167 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 KRT2P35908 639 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 TRIM71Q2Q1W2 868 aaKnown RBP20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 Q4G0T1 1027 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 ABHD15Q6UXT9 468 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 GLG1Q92896 1179 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 SMARCAD1Q9H4L7 1026 aa20.75■□□□□ 0.91
SNRPA1-203ENST00000540017 IGKV6D-21A0A0A0MT36 114 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 BTBD18B2RXH4 712 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 PITPNM1O00562 1244 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 TREHO43280 583 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 ADAM17P78536 824 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 GUCY1B3Q02153 619 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 PTK7Q13308 1070 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 LETM2Q2VYF4 491 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 LRIT3Q3SXY7 679 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 TMEM240Q5SV17 173 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 SERINC5Q86VE9 423 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 SLC5A5Q92911 643 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 ATP6V0A1Q93050 837 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 LRCH3Q96II8 777 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 TMX3Q96JJ7 454 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 IL23AQ9NPF7 189 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 TBC1D22BQ9NU19 505 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 ERAP1Q9NZ08 941 aa20.74■□□□□ 0.91
SNRPA1-203ENST00000540017 SCN5AQ14524 2016 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 SLC37A4O43826 429 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 IQCF3P0C7M6 154 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 RBL2Q08999 1139 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 BFSP2Q13515 415 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 MOXD1Q6UVY6 613 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 ZNF365Q70YC5 407 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 NEK8Q86SG6 692 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 CCDC60Q8IWA6 550 aaPredicted RBP20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 DIS3L2Q8IYB7 885 aaKnown RBP20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 LMBR1Q8WVP7 490 aa20.73■□□□□ 0.91
SNRPA1-203ENST00000540017 SZT2Q5T011 3432 aa20.72■□□□□ 0.91
SNRPA1-203ENST00000540017 CKBP12277 381 aa20.72■□□□□ 0.91
SNRPA1-203ENST00000540017 STAT5BP51692 787 aa20.72■□□□□ 0.91
SNRPA1-203ENST00000540017 HMGN5P82970 282 aaKnown RBP20.72■□□□□ 0.91
SNRPA1-203ENST00000540017 TRIM29Q14134 588 aa20.72■□□□□ 0.91
SNRPA1-203ENST00000540017 GPNMBQ14956 572 aa20.72■□□□□ 0.91
SNRPA1-203ENST00000540017 PLCB4Q15147 1175 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms