RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 KRT79Q5XKE5 535 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 OR2W6PQ8NHA6 318 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 BCCIPQ9P287 314 aaKnown RBP eCLIP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 SHTN1A0MZ66 631 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 LRRC53A6NM62 1247 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 GLI1P08151 1106 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 CKAP4Q07065 602 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 TDRD12Q587J7 1177 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 PSTPIP2Q9H939 334 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 EPB41L5Q9HCM4 733 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 FAM184BQ9ULE4 1060 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 PCDHA13Q9Y5I0 950 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 TAL1P17542 331 aaPredicted RBP13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 VAV2P52735 878 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 SNAP25P60880 206 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 COASYQ13057 564 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 NNTQ13423 1086 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 KCNV1Q6PIU1 500 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 SIAH1Q8IUQ4 282 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 KLHL7Q8IXQ5 586 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 OSBPL9Q96SU4 736 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 JPH2Q9BR39 696 aaPredicted RBP13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 CD248Q9HCU0 757 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 SNX12Q9UMY4 172 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 PCDHA2Q9Y5H9 948 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 AFF2P51816 1311 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 ANKRD31Q8N7Z5 1873 aa13.85□□□□□ -0.19
SFSWAP-208ENST00000539506 STAT3P40763 770 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 PPP1R2P41236 205 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 MAN2A1Q16706 1144 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 AENQ8WTP8 325 aaKnown RBP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 CUL5Q93034 780 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 RNPC3Q96LT9 517 aaKnown RBP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 ZC3H12CQ9C0D7 883 aaKnown RBP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 PPANQ9NQ55 473 aaKnown RBP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 GRIN2DO15399 1336 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 TRIM37O94972 964 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 TCP10Q12799 353 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 CHADLQ6NUI6 762 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 VIPAS39Q9H9C1 493 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 PCDHA12Q9UN75 941 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 GREB1LQ9C091 1923 aaPredicted RBP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 ARFGEF1Q9Y6D6 1849 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 DDTLA6NHG4 134 aaPredicted RBP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 EIF3HO15372 352 aaKnown RBP eCLIP13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 NOL4O94818 638 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 KIF11P52732 1056 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 PPFIA1Q13136 1202 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 QRICH1Q2TAL8 776 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 CCDC70Q6NSX1 233 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 MMS22LQ6ZRQ5 1243 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 SWAP70Q9UH65 585 aa13.84□□□□□ -0.19
SFSWAP-208ENST00000539506 QSER1Q2KHR3 1735 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 POTEB3A0JP26 581 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 POTECB2RU33 542 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 RAD21O60216 631 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 HSF2BPO75031 334 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 TACC1O75410 805 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 LRRC63Q05C16 580 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 ASTE1Q2TB18 679 aaPredicted RBP13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 HGSNATQ68CP4 663 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 PPP1R18Q6NYC8 613 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 C8orf74Q6P047 294 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 POTEBQ6S5H4 581 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 SH3BP5LQ7L8J4 393 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 KIAA1024Q9UPX6 916 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 SPATA31A6Q5VVP1 1343 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 LCA5LO95447 670 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 SLC1A4P43007 532 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 MAGEA1P43355 309 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 HAUS3Q68CZ6 603 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 EP400NLQ6ZTU2 488 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 MAATS1Q7Z4T9 603 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 DDX42Q86XP3 938 aaKnown RBP eCLIP13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 KRT12Q99456 494 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 RAB34Q9BZG1 259 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 SH2D4AQ9H788 454 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 DBNDD1Q9H9R9 158 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 PANK4Q9NVE7 773 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 SUGT1Q9Y2Z0 365 aa13.83□□□□□ -0.2
SFSWAP-208ENST00000539506 TLR2O60603 784 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 EEF2P13639 858 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 ACTN3Q08043 901 aaPredicted RBP13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 IFT88Q13099 833 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 ARSHQ5FYA8 562 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 NELFCDQ8IXH7 590 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 OTUD6BQ8N6M0 293 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 BCAS3Q9H6U6 928 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 MYH4Q9Y623 1939 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 SIPA1L1O43166 1804 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 MEIS2O14770 477 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 MED24O75448 989 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 MRPL12P52815 198 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 TUBB4BP68371 445 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 JAG1P78504 1218 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 HYIQ5T013 277 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 GPATCH4Q5T3I0 446 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 MYOCDQ8IZQ8 938 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms