RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM161BQ96MY7 647 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 RNPEPQ9H4A4 650 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 AGO4Q9HCK5 861 aaKnown RBP16.87■□□□□ 0.29
USP28-204ENST00000537642 JPH1Q9HDC5 661 aaPredicted RBP16.87■□□□□ 0.29
USP28-204ENST00000537642 SH3GLB2Q9NR46 395 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 ZNF215Q9UL58 517 aaPredicted RBP16.87■□□□□ 0.29
USP28-204ENST00000537642 NFASCO94856 1347 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 GBF1Q92538 1859 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 IGLV3-22A0A075B6J6 115 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 FAM86B1E9PN63 330 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 PFKFB2O60825 505 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 DEXIO95424 95 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 FAM86B2P0C5J1 330 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 ITGB3BPQ13352 177 aaPredicted RBP16.86■□□□□ 0.29
USP28-204ENST00000537642 CPLX2Q6PUV4 134 aaKnown RBP16.86■□□□□ 0.29
USP28-204ENST00000537642 LRRC8DQ7L1W4 858 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 SERINC5Q86VE9 423 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 BICD2Q8TD16 824 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 AIFM3Q96NN9 605 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 SLKQ9H2G2 1235 aaPredicted RBP16.86■□□□□ 0.29
USP28-204ENST00000537642 MTIF3Q9H2K0 278 aaKnown RBP16.86■□□□□ 0.29
USP28-204ENST00000537642 TTYH1Q9H313 450 aaPredicted RBP16.86■□□□□ 0.29
USP28-204ENST00000537642 SLC9A2Q9UBY0 812 aa16.86■□□□□ 0.29
USP28-204ENST00000537642 CDH23Q9H251 3354 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 TREHO43280 583 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 DNAJB2P25686 324 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 NLRP5P59047 1200 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 ANKRD1Q15327 319 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 ZNF618Q5T7W0 954 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 TRAF7Q6Q0C0 670 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 PLA2G4DQ86XP0 818 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 ATP6V0A1Q93050 837 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 GUCD1Q96NT3 240 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 PCYT2Q99447 389 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 SDF4Q9BRK5 362 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 SEMA6BQ9H3T3 888 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 SETD4Q9NVD3 440 aa16.85■□□□□ 0.29
USP28-204ENST00000537642 RBAK-RBAKDNI3L0D1 243 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 EDIL3O43854 480 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 LGR5O75473 907 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 PBX2P40425 430 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 ACTR2P61160 394 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 ADAM17P78536 824 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 LMBR1Q8WVP7 490 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 PBX4Q9BYU1 374 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 FTOQ9C0B1 505 aaKnown RBP eCLIP16.84■□□□□ 0.29
USP28-204ENST00000537642 PCDHA4Q9UN74 947 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 EMSYQ7Z589 1322 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 COL6A3P12111 3177 aa16.84■□□□□ 0.29
USP28-204ENST00000537642 TMEM265A0A087WTH1 108 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 ZBBXA8MT70 800 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 NBNO60934 754 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 DTNBO60941 627 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 PARNO95453 639 aaKnown RBP16.83■□□□□ 0.28
USP28-204ENST00000537642 CTDNEP1O95476 244 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 CXCL10P02778 98 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 GNAT1P11488 350 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 ACTN1P12814 892 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 MARK3P27448 753 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 MBTPS1Q14703 1052 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 NPY5RQ15761 445 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 C8orf34Q49A92 452 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 GLG1Q92896 1179 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 UIMC1Q96RL1 719 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 SMARCAD1Q9H4L7 1026 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 ERAP1Q9NZ08 941 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 SLC4A7Q9Y6M7 1214 aa16.83■□□□□ 0.28
USP28-204ENST00000537642 NRCAMQ92823 1304 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 STK36Q9NRP7 1315 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 M0R2N6 131 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 DDX39AO00148 427 aaKnown RBP16.82■□□□□ 0.28
USP28-204ENST00000537642 DHX15O43143 795 aaKnown RBP16.82■□□□□ 0.28
USP28-204ENST00000537642 CDKL5O76039 1030 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 ATG7O95352 703 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 LARGE1O95461 756 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 CCNE2O96020 404 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 CIITAP33076 1130 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 THPOP40225 353 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 NEK4P51957 841 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 SETQ01105 290 aaPredicted RBP16.82■□□□□ 0.28
USP28-204ENST00000537642 ME3Q16798 604 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 DAGLBQ8NCG7 672 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 TIFAQ96CG3 184 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 STXBP5LQ9Y2K9 1186 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 MYO9BQ13459 2157 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 PTPRSQ13332 1948 aa16.82■□□□□ 0.28
USP28-204ENST00000537642 IPO5O00410 1097 aaKnown RBP16.81■□□□□ 0.28
USP28-204ENST00000537642 PPFIA1Q13136 1202 aa16.81■□□□□ 0.28
USP28-204ENST00000537642 TCTN1Q2MV58 587 aa16.81■□□□□ 0.28
USP28-204ENST00000537642 PRR16Q569H4 304 aa16.81■□□□□ 0.28
USP28-204ENST00000537642 BLIDQ8IZY5 108 aa16.81■□□□□ 0.28
USP28-204ENST00000537642 FAM177A1Q8N128 213 aaPredicted RBP16.81■□□□□ 0.28
USP28-204ENST00000537642 NECAB1Q8N987 351 aa16.81■□□□□ 0.28
USP28-204ENST00000537642 LENG9Q96B70 501 aa16.81■□□□□ 0.28
USP28-204ENST00000537642 IGKV6D-21A0A0A0MT36 114 aa16.8■□□□□ 0.28
USP28-204ENST00000537642 RSPH10B2B2RC85 870 aa16.8■□□□□ 0.28
USP28-204ENST00000537642 RSPH10BP0C881 870 aa16.8■□□□□ 0.28
USP28-204ENST00000537642 ATP2A2P16615 1042 aaKnown RBP16.8■□□□□ 0.28
USP28-204ENST00000537642 USP11P51784 963 aa16.8■□□□□ 0.28
USP28-204ENST00000537642 RABGGTBP53611 331 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms