RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 NOP56O00567 594 aaKnown RBP16.36■□□□□ 0.21
CPSF1-206ENST00000531480 MYCNP04198 464 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-206ENST00000531480 LGALS2P05162 132 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 SPIRE1Q08AE8 756 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 RESTQ13127 1097 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 PPP2R5CQ13362 524 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 TTC38Q5R3I4 469 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 MCTP1Q6DN14 999 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 ANKRD33Q7Z3H0 272 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 SESTD1Q86VW0 696 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 C4orf32Q8N8J7 132 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 RDM1Q8NG50 284 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 FERMT2Q96AC1 680 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 PCYT2Q99447 389 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 VAV3Q9UKW4 847 aa16.36■□□□□ 0.21
CPSF1-206ENST00000531480 NOL7Q9UMY1 257 aaKnown RBP16.36■□□□□ 0.21
CPSF1-206ENST00000531480 MYH9P35579 1960 aaKnown RBP16.36■□□□□ 0.21
CPSF1-206ENST00000531480 VPS37CA5D8V6 355 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-206ENST00000531480 SORBS3O60504 671 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 NEMFO60524 1076 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 GAS7O60861 476 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 HSP90AA1P07900 732 aaKnown RBP16.35■□□□□ 0.21
CPSF1-206ENST00000531480 MYL3P08590 195 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 HOXC8P31273 242 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 TCF7P36402 384 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-206ENST00000531480 LRRC26Q2I0M4 334 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 LRCH2Q5VUJ6 765 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 NFRKBQ6P4R8 1299 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 SLFN12Q8IYM2 578 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 AFAP1L1Q8TED9 768 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 TOX2Q96NM4 488 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 KATNAL1Q9BW62 490 aa16.35■□□□□ 0.21
CPSF1-206ENST00000531480 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.35■□□□□ 0.21
CPSF1-206ENST00000531480 ARVCFO00192 962 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 SUPT20HL2P0C7V6 817 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 ZNF286BP0CG31 522 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 SFNP31947 248 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 PTPN11Q06124 597 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-206ENST00000531480 ITGA7Q13683 1181 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 PLPPR4Q7Z2D5 763 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 GJA10Q969M2 543 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 HTATIP2Q9BUP3 242 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 TEKT3Q9BXF9 490 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 TMEM60Q9H2L4 133 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 ZSCAN16Q9H4T2 348 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-206ENST00000531480 PCDHB6Q9Y5E3 794 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 PCDHA10Q9Y5I2 948 aa16.34■□□□□ 0.21
CPSF1-206ENST00000531480 WDR64B1ANS9 1081 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 H3BRB1 525 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 MCM7P33993 719 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 DDIT3P35638 169 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 PSEN2P49810 448 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 JAK3P52333 1124 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 PSMC6P62333 389 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 ZNF174Q15697 407 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 CALCRLQ16602 461 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 NBPF20Q3BBV1 942 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 UNC45AQ9H3U1 944 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 TUT1Q9H6E5 874 aaKnown RBP16.33■□□□□ 0.2
CPSF1-206ENST00000531480 MROH7Q68CQ1 1323 aa16.33■□□□□ 0.2
CPSF1-206ENST00000531480 DDX39AO00148 427 aaKnown RBP16.32■□□□□ 0.2
CPSF1-206ENST00000531480 LAD1O00515 517 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 BAG4O95429 457 aaKnown RBP16.32■□□□□ 0.2
CPSF1-206ENST00000531480 CD4P01730 458 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 PRPHP41219 470 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 SLC26A2P50443 739 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 SP4Q02446 784 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 NBR1Q14596 966 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 MFSD10Q14728 455 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 KIAA0753Q2KHM9 967 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 MIS18BP1Q6P0N0 1132 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 FERMT3Q86UX7 667 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 TRIM50Q86XT4 487 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 CCDC60Q8IWA6 550 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-206ENST00000531480 FAM126BQ8IXS8 530 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 DPF3Q92784 378 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 UIMC1Q96RL1 719 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 SMARCAD1Q9H4L7 1026 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 DISC1Q9NRI5 854 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 ERAP1Q9NZ08 941 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 ZNF215Q9UL58 517 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-206ENST00000531480 IGSF9BQ9UPX0 1349 aa16.32■□□□□ 0.2
CPSF1-206ENST00000531480 MAFBQ9Y5Q3 323 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-206ENST00000531480 MORC2Q9Y6X9 1032 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-206ENST00000531480 KAT6AQ92794 2004 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 TRIP12Q14669 1992 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-206ENST00000531480 H0YGN5 161 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 PSAPP07602 524 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 OR52Z1P0C646 297 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 ZSCAN22P10073 491 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-206ENST00000531480 ATP2B1P20020 1258 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 ATN1P54259 1190 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-206ENST00000531480 RTP1P59025 263 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 ADAM17P78536 824 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 ATP2C1P98194 919 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-206ENST00000531480 PKP1Q13835 747 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 TRIM60Q495X7 471 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 CTAGE1Q96RT6 745 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 TTC12Q9H892 705 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-206ENST00000531480 GTF2IRD1Q9UHL9 959 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms