RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LSM14BQ9BX40 385 aaKnown RBP23.42■■□□□ 1.34
VPS28-205ENST00000526204 NLRC4Q9NPP4 1024 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 DNM3Q9UQ16 869 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 NPHP3-ACAD11A0A0J9YXS1 232 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 F5H6K3 240 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 N4BP1O75113 896 aaKnown RBP23.41■■□□□ 1.34
VPS28-205ENST00000526204 SLURP2P0DP57 97 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 RPA1P27694 616 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 TNNT3P45378 269 aaPredicted RBP23.41■■□□□ 1.34
VPS28-205ENST00000526204 KLRC3Q07444 240 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 SPIRE1Q08AE8 756 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 PRR16Q569H4 304 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 KRT27Q7Z3Y8 459 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 FBXO11Q86XK2 927 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 CATSPER3Q86XQ3 398 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 SIAH1Q8IUQ4 282 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 DBNDD1Q9H9R9 158 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 STAT3P40763 770 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 EPS15P42566 896 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 RBM5P52756 815 aaKnown RBP eCLIP23.41■■□□□ 1.34
VPS28-205ENST00000526204 POLR2FP61218 127 aaKnown RBP23.41■■□□□ 1.34
VPS28-205ENST00000526204 RASSF7Q02833 373 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 C2orf54Q08AI8 447 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 FAN1Q9Y2M0 1017 aa23.41■■□□□ 1.34
VPS28-205ENST00000526204 POTEFA5A3E0 1075 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 SPDYE3A6NKU9 549 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 FAM196BA6NMK8 535 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 POTEIP0CG38 1075 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 SREBF1P36956 1147 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 LMAN1P49257 510 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 CACNB3P54284 484 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 POTEGQ6S5H5 508 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 POTEEQ6S8J3 1075 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 SYT2Q8N9I0 419 aaPredicted RBP23.4■■□□□ 1.34
VPS28-205ENST00000526204 SPATA4Q8NEY3 305 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 DRC1Q96MC2 740 aa23.4■■□□□ 1.34
VPS28-205ENST00000526204 PAFAH1B1P43034 410 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 MMP14P50281 582 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 HNRNPH2P55795 449 aaKnown RBP23.39■■□□□ 1.34
VPS28-205ENST00000526204 CACNB1Q02641 598 aaPredicted RBP23.39■■□□□ 1.34
VPS28-205ENST00000526204 CCDC181Q5TID7 509 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 SH3BP5LQ7L8J4 393 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 KCTD17Q8N5Z5 321 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 AIPL1Q9NZN9 384 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 RNF14Q9UBS8 474 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 HPCAL4Q9UM19 191 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 TRAF3IP3Q9Y228 551 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 ADAMTSL1Q8N6G6 1762 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 NRXN2Q9P2S2 1712 aa23.39■■□□□ 1.34
VPS28-205ENST00000526204 TLR2O60603 784 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 GIT2Q14161 759 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 ABCB5Q2M3G0 1257 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 MUM1L1Q5H9M0 696 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 DACT2Q5SW24 774 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 ZHX3Q9H4I2 956 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 SERPINA10Q9UK55 444 aa23.39■■□□□ 1.33
VPS28-205ENST00000526204 CIITAP33076 1130 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 RAD51AP2Q09MP3 1159 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 SYDE2Q5VT97 1194 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 FRMD5Q7Z6J6 570 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 UIMC1Q96RL1 719 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 KCNQ5Q9NR82 932 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 SALL4Q9UJQ4 1053 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 ARFGEF1Q9Y6D6 1849 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 NR2F2P24468 414 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 IKQ13123 557 aaPredicted RBP23.38■■□□□ 1.33
VPS28-205ENST00000526204 SLC18A3Q16572 532 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 KNOP1Q1ED39 458 aaKnown RBP23.38■■□□□ 1.33
VPS28-205ENST00000526204 SHROOM1Q2M3G4 852 aaPredicted RBP23.38■■□□□ 1.33
VPS28-205ENST00000526204 NFRKBQ6P4R8 1299 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 COL23A1Q86Y22 540 aaPredicted RBP23.38■■□□□ 1.33
VPS28-205ENST00000526204 TEX2Q8IWB9 1127 aa23.38■■□□□ 1.33
VPS28-205ENST00000526204 A0A0U1RQG5 324 aaPredicted RBP23.37■■□□□ 1.33
VPS28-205ENST00000526204 NDUFB10O96000 172 aa23.37■■□□□ 1.33
VPS28-205ENST00000526204 SPATA31C1P0DKV0 1188 aa23.37■■□□□ 1.33
VPS28-205ENST00000526204 KCNH2Q12809 1159 aa23.37■■□□□ 1.33
VPS28-205ENST00000526204 LENG9Q96B70 501 aa23.37■■□□□ 1.33
VPS28-205ENST00000526204 CRACR2AQ9BSW2 395 aa23.37■■□□□ 1.33
VPS28-205ENST00000526204 TLR10Q9BXR5 811 aa23.37■■□□□ 1.33
VPS28-205ENST00000526204 NAP1L1P55209 391 aaKnown RBP23.36■■□□□ 1.33
VPS28-205ENST00000526204 NAB2Q15742 525 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 KLHDC7AQ5VTJ3 777 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 BTNL9Q6UXG8 535 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 ANKRD13CQ8N6S4 541 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 GOLGA5Q8TBA6 731 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 ZNF622Q969S3 477 aaKnown RBP eCLIP23.36■■□□□ 1.332e-11■■■■■ 40.7
VPS28-205ENST00000526204 P2RX7Q99572 595 aaKnown RBP23.36■■□□□ 1.33
VPS28-205ENST00000526204 SELENOOQ9BVL4 669 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 SYNPO2Q9UMS6 1093 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 PDXKO00764 312 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 CALUO43852 315 aaPredicted RBP23.36■■□□□ 1.33
VPS28-205ENST00000526204 ZMYND10O75800 440 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 MMP10P09238 476 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 BMP3P12645 472 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 KLHL30Q0D2K2 578 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 PABPC4Q13310 644 aaKnown RBP eCLIP23.36■■□□□ 1.331e-7■■■□□ 18.8
VPS28-205ENST00000526204 RAPGEF1Q13905 1077 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 EPM2AIP1Q7L775 607 aaPredicted RBP23.36■■□□□ 1.33
VPS28-205ENST00000526204 FLAD1Q8NFF5 587 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 GANQ9H2C0 597 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms