RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 NLRP5P59047 1200 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 ZNF200P98182 395 aaPredicted RBP11.06□□□□□ -0.64
RNF4-221ENST00000513643 PTK7Q13308 1070 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 PPIGQ13427 754 aaKnown RBP eCLIP11.06□□□□□ -0.644e-10■■□□□ 12.4
RNF4-221ENST00000513643 Q4G0T1 1027 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 B3GNT9Q6UX72 402 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 ABHD15Q6UXT9 468 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 SERINC5Q86VE9 423 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 BLIDQ8IZY5 108 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 C7orf31Q8N865 590 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 CAGE1Q8TC20 777 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 TNFRSF25Q93038 417 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 WNT8BQ93098 351 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.06□□□□□ -0.642e-7■■■□□ 16.9
RNF4-221ENST00000513643 PPP1R12CQ9BZL4 782 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 RNPEPQ9H4A4 650 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 JPH1Q9HDC5 661 aaPredicted RBP11.06□□□□□ -0.64
RNF4-221ENST00000513643 IL23AQ9NPF7 189 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 GJB4Q9NTQ9 266 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 EMSYQ7Z589 1322 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 A0A0C4DFX4 3053 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 NOP56O00567 594 aaKnown RBP11.05□□□□□ -0.64
RNF4-221ENST00000513643 JAK2O60674 1132 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 DTNBO60941 627 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 SMIM10L2AP0DMW4 78 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 SMIM10L2BP0DMW5 78 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 CCL23P55773 120 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 ACTR2P61160 394 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 SETQ01105 290 aaPredicted RBP11.05□□□□□ -0.64
RNF4-221ENST00000513643 MOXD1Q6UVY6 613 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 PLPPR4Q7Z2D5 763 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 RPAINQ86UA6 219 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 PLA2G4DQ86XP0 818 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 TRIM50Q86XT4 487 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 TBCKQ8TEA7 893 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 AFAP1L1Q8TED9 768 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 HERVK_113Q902F9 699 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 LRCH3Q96II8 777 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 TBC1D32Q96NH3 1257 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 LLPHQ9BRT6 129 aaKnown RBP11.05□□□□□ -0.64
RNF4-221ENST00000513643 ALG1Q9BT22 464 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 TBC1D22BQ9NU19 505 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 ORC3Q9UBD5 711 aaPredicted RBP11.05□□□□□ -0.64
RNF4-221ENST00000513643 SLC9A2Q9UBY0 812 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 KCNJ14Q9UNX9 436 aa11.05□□□□□ -0.64
RNF4-221ENST00000513643 MBLAC1A4D2B0 266 aaPredicted RBP11.04□□□□□ -0.64
RNF4-221ENST00000513643 IPO5O00410 1097 aaKnown RBP11.04□□□□□ -0.64
RNF4-221ENST00000513643 MSH4O15457 936 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 CXCL10P02778 98 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 PFKMP08237 780 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 CKBP12277 381 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 RFC2P35250 354 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 SMAD3P84022 425 aaKnown RBP11.04□□□□□ -0.64
RNF4-221ENST00000513643 BFSP2Q13515 415 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 MBTPS1Q14703 1052 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 RABEP1Q15276 862 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 FAM47CQ5HY64 1035 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 EARS2Q5JPH6 523 aaKnown RBP11.04□□□□□ -0.64
RNF4-221ENST00000513643 MARCH8Q5T0T0 291 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 FAM109BQ6ICB4 259 aaPredicted RBP11.04□□□□□ -0.64
RNF4-221ENST00000513643 ZNF365Q70YC5 407 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 OXER1Q8TDS5 423 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 WASF1Q92558 559 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 SLC5A5Q92911 643 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 SCLYQ96I15 445 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 ZSCAN31Q96LW9 406 aaPredicted RBP11.04□□□□□ -0.64
RNF4-221ENST00000513643 SMARCAD1Q9H4L7 1026 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 ERAP1Q9NZ08 941 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 NRCAMQ92823 1304 aa11.04□□□□□ -0.64
RNF4-221ENST00000513643 C17orf102A2RUQ5 167 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 TREHO43280 583 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 ACRP10323 421 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 SELPP16109 830 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 ATP4AP20648 1035 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 ZNF76P36508 570 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 MKRN4PQ13434 485 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 PRR16Q569H4 304 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 FAM26DQ5JW98 314 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 UTP14CQ5TAP6 766 aaKnown RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 PPP4R3AQ6IN85 833 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 ZNF746Q6NUN9 644 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 PSRC1Q6PGN9 363 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 KRT25Q7Z3Z0 450 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 RPUSD2Q8IZ73 545 aaKnown RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 ETNPPLQ8TBG4 499 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 RIT2Q99578 217 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 SDF4Q9BRK5 362 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 ZNF577Q9BSK1 485 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 SH2B1Q9NRF2 756 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 SETD4Q9NVD3 440 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 PKD2L1Q9P0L9 805 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 CXXC1Q9P0U4 656 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 ZNF215Q9UL58 517 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 MAFBQ9Y5Q3 323 aaPredicted RBP11.03□□□□□ -0.64
RNF4-221ENST00000513643 TET1Q8NFU7 2136 aa11.03□□□□□ -0.64
RNF4-221ENST00000513643 DOCK5Q9H7D0 1870 aa11.02□□□□□ -0.64
RNF4-221ENST00000513643 NBNO60934 754 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 CAND2O75155 1236 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 PSMD10O75832 226 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 PARNO95453 639 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms