RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 C8orf76Q96K31 380 aa18.92■□□□□ 0.62
SNCA-209ENST00000506244 NOC4LQ9BVI4 516 aaKnown RBP18.92■□□□□ 0.62
SNCA-209ENST00000506244 PPP1R12CQ9BZL4 782 aa18.92■□□□□ 0.62
SNCA-209ENST00000506244 SMARCAD1Q9H4L7 1026 aa18.92■□□□□ 0.62
SNCA-209ENST00000506244 ERAP1Q9NZ08 941 aa18.92■□□□□ 0.62
SNCA-209ENST00000506244 CYP3A7-CYP3A51PA0A087WV96 503 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 GNAT1P11488 350 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 CYP3A7P24462 503 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 ACTR2P61160 394 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 KRT76Q01546 638 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 PPIGQ13427 754 aaKnown RBP eCLIP18.91■□□□□ 0.62
SNCA-209ENST00000506244 BFSP2Q13515 415 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 INF2Q27J81 1249 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 Q4G0T1 1027 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 KRT40Q6A162 431 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 MFSD5Q6N075 450 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 PIK3AP1Q6ZUJ8 805 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 TRIM50Q86XT4 487 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 DIS3L2Q8IYB7 885 aaKnown RBP18.91■□□□□ 0.62
SNCA-209ENST00000506244 TDHQ8IZJ6 230 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 CAGE1Q8TC20 777 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 TNPO1Q92973 898 aaKnown RBP18.91■□□□□ 0.62
SNCA-209ENST00000506244 LENG9Q96B70 501 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 TMX3Q96JJ7 454 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 GJB4Q9NTQ9 266 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 HDAC6Q9UBN7 1215 aa18.91■□□□□ 0.62
SNCA-209ENST00000506244 GSTTP1A0A1W2PQM5 241 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 PITPNM1O00562 1244 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 DTNBO60941 627 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 SLC26A2P50443 739 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 LETM2Q2VYF4 491 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 HABP4Q5JVS0 413 aaKnown RBP18.9■□□□□ 0.62
SNCA-209ENST00000506244 GDF6Q6KF10 455 aaPredicted RBP18.9■□□□□ 0.62
SNCA-209ENST00000506244 ZNF746Q6NUN9 644 aaPredicted RBP18.9■□□□□ 0.62
SNCA-209ENST00000506244 SMAP1Q8IYB5 467 aaPredicted RBP18.9■□□□□ 0.62
SNCA-209ENST00000506244 OXER1Q8TDS5 423 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 RIT2Q99578 217 aa18.9■□□□□ 0.62
SNCA-209ENST00000506244 DDX25Q9UHL0 483 aaKnown RBP18.9■□□□□ 0.62
SNCA-209ENST00000506244 C17orf102A2RUQ5 167 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 DDX39AO00148 427 aaKnown RBP18.89■□□□□ 0.61
SNCA-209ENST00000506244 GAS7O60861 476 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 LGR5O75473 907 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 SMIM10L2AP0DMW4 78 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 SMIM10L2BP0DMW5 78 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 CYP2C9P11712 490 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 ITGB8P26012 769 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 FOSBP53539 338 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 FAM160B1Q5W0V3 765 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 PPP4R3AQ6IN85 833 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 MIS18BP1Q6P0N0 1132 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 RETREG2Q8NC44 543 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 MBOAT7Q96N66 472 aa18.89■□□□□ 0.61
SNCA-209ENST00000506244 TANC1Q9C0D5 1861 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 WDR64B1ANS9 1081 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 MSH4O15457 936 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 DHX15O43143 795 aaKnown RBP18.88■□□□□ 0.61
SNCA-209ENST00000506244 CD2BP2O95400 341 aaKnown RBP18.88■□□□□ 0.61
SNCA-209ENST00000506244 TDP2O95551 362 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 HOXC8P31273 242 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 NR5A1Q13285 461 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 PTK7Q13308 1070 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 GNL2Q13823 731 aaKnown RBP18.88■□□□□ 0.61
SNCA-209ENST00000506244 LRCH2Q5VUJ6 765 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 PLPPR4Q7Z2D5 763 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 PPP1R13LQ8WUF5 828 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 SLC5A5Q92911 643 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 TNFRSF25Q93038 417 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 TEKT3Q9BXF9 490 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 TELO2Q9Y4R8 837 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.88■□□□□ 0.61
SNCA-209ENST00000506244 NRCAMQ92823 1304 aa18.88■□□□□ 0.61
SNCA-209ENST00000506244 BACH1O14867 736 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 CCNT1O60563 726 aaKnown RBP18.87■□□□□ 0.61
SNCA-209ENST00000506244 ATG7O95352 703 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 CCNE2O96020 404 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 CYP2C18P33260 490 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 RBL2Q08999 1139 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 PSRC1Q6PGN9 363 aaPredicted RBP18.87■□□□□ 0.61
SNCA-209ENST00000506244 FBXO18Q8NFZ0 1043 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 AFAP1L1Q8TED9 768 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 ATP6V0A1Q93050 837 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 TRIOBPQ9H2D6 2365 aa18.87■□□□□ 0.61
SNCA-209ENST00000506244 BTBD18B2RXH4 712 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 PARNO95453 639 aaKnown RBP18.86■□□□□ 0.61
SNCA-209ENST00000506244 PSAPP07602 524 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 PFKMP08237 780 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 MARK3P27448 753 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 SFNP31947 248 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 RFC2P35250 354 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 STAT5BP51692 787 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 JAK3P52333 1124 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 PPFIA1Q13136 1202 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 ABHD15Q6UXT9 468 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 RDM1Q8NG50 284 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 FOXP1Q9H334 677 aaPredicted RBP18.86■□□□□ 0.61
SNCA-209ENST00000506244 ZNF302Q9NR11 478 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 TRPC6Q9Y210 931 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 SAMM50Q9Y512 469 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 PCDHA10Q9Y5I2 948 aa18.86■□□□□ 0.61
SNCA-209ENST00000506244 UMODL1Q5DID0 1318 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms