RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	IGFBP4	P22692	258 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	TCF7	P36402	384 aa	Predicted RBP	11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	ZNF76	P36508	570 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	COL9A3	Q14050	684 aa	Predicted RBP	11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	ZNF618	Q5T7W0	954 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	RSPH3	Q86UC2	560 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	GLG1	Q92896	1179 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	KCNB2	Q92953	911 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	VWCE	Q96DN2	955 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	CTAGE1	Q96RT6	745 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	RNPEP	Q9H4A4	650 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	JADE2	Q9NQC1	790 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	ERAP1	Q9NZ08	941 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	UBIAD1	Q9Y5Z9	338 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	PTPRS	Q13332	1948 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	GTPBP6	O43824	516 aa	Predicted RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	NBN	O60934	754 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	LGR5	O75473	907 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	RPLP2	P05387	115 aa	Known RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	CA3	P07451	260 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	KCNA2	P16389	499 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	ITGB5	P18084	799 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	GNA11	P29992	359 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	WDR5	P61964	334 aa	Known RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	ARHGAP4	P98171	946 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	ZNF200	P98182	395 aa	Predicted RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	TRIM71	Q2Q1W2	868 aa	Known RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	SYMPK	Q92797	1274 aa	Known RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	BRF1	Q92994	677 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	MXRA8	Q9BRK3	442 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	ANO3	Q9BYT9	981 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	SMARCAD1	Q9H4L7	1026 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	AZI2	Q9H6S1	392 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	C6orf50	Q9HD87	102 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	JPH1	Q9HDC5	661 aa	Predicted RBP	11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	SNX14	Q9Y5W7	946 aa		11.9	□□□□□ -0.5
NR1I3-222	ENST00000506018	MYH9	P35579	1960 aa	Known RBP	11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	STXBP3	O00186	592 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	TREH	O43280	583 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	AMH	P03971	560 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	SCG2	P13521	617 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	MYOG	P15173	224 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	RPS6KB1	P23443	525 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	CDC27	P30260	824 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	HOXC8	P31273	242 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	APOBR	Q0VD83	1088 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	PFKFB3	Q16875	520 aa	Predicted RBP	11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	CEP55	Q53EZ4	464 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	TAF2	Q6P1X5	1199 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	TRIM50	Q86XT4	487 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	FBXL16	Q8N461	479 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	CCDC148	Q8NFR7	591 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	BICD2	Q8TD16	824 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	PPM1E	Q8WY54	764 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	SEPT8	Q92599	483 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	BCAS3	Q9H6U6	928 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	KCNH7	Q9NS40	1196 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	SETD4	Q9NVD3	440 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	PKD2L1	Q9P0L9	805 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	SLC9A2	Q9UBY0	812 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	TCEAL9	Q9UHQ7	104 aa		11.89	□□□□□ -0.51
NR1I3-222	ENST00000506018	ATP9A	O75110	1047 aa		11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	ADD1	P35611	737 aa	Known RBP	11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	SREBF1	P36956	1147 aa		11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	FUT2	Q10981	343 aa		11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	PPFIA1	Q13136	1202 aa		11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	APBB2	Q92870	758 aa		11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	NFASC	O94856	1347 aa		11.88	□□□□□ -0.51
NR1I3-222	ENST00000506018	NID2	Q14112	1375 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	UNC80	Q8N2C7	3258 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	ESYT2	A0FGR8	921 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	RRN3P2	A6NIE6	340 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	PRPF3	O43395	683 aa	Known RBP	11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	GJB5	O95377	273 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	CTSH	P09668	335 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	CPA1	P15085	419 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	SET	Q01105	290 aa	Predicted RBP	11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	GPNMB	Q14956	572 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	TYW1B	Q6NUM6	668 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	CPLX2	Q6PUV4	134 aa	Known RBP	11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	NIPA1	Q7RTP0	329 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	TRIM22	Q8IYM9	498 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	REXO1	Q8N1G1	1221 aa	Known RBP	11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	IL27	Q8NEV9	243 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	LMBR1	Q8WVP7	490 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	WNT8B	Q93098	351 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	RAD9A	Q99638	391 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	RNF26	Q9BY78	433 aa	Predicted RBP	11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	ZMYND12	Q9H0C1	365 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	TRPC6	Q9Y210	931 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	CYP46A1	Q9Y6A2	500 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	SI	P14410	1827 aa		11.87	□□□□□ -0.51
NR1I3-222	ENST00000506018	CUL9	Q8IWT3	2517 aa		11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	GSTTP1	A0A1W2PQM5	241 aa		11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	CPLX1	O14810	134 aa		11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	MARK3	P27448	753 aa		11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	CLK2	P49760	499 aa	Known RBP	11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	SLC26A2	P50443	739 aa		11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	HIC1	Q14526	733 aa		11.86	□□□□□ -0.51
NR1I3-222	ENST00000506018	GRIK4	Q16099	956 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms