RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 PRR16Q569H4 304 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 RASIP1Q5U651 963 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 FOXD4L5Q5VV16 416 aaPredicted RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 ANO1Q5XXA6 986 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 IQSEC1Q6DN90 963 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 MOXD1Q6UVY6 613 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 NIPA1Q7RTP0 329 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 BRAPQ7Z569 592 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 CYP2W1Q8TAV3 490 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 FOXD4L4Q8WXT5 416 aaPredicted RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 LENG1Q96BZ8 264 aaPredicted RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 CDHR1Q96JP9 859 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 COG5Q9UP83 839 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 IGLV3-22A0A075B6J6 115 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 CYP3A7-CYP3A51PA0A087WV96 503 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 SPATA31C2B4DYI2 1134 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 MEIS1O00470 390 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 NKRFO15226 690 aaKnown RBP eCLIP11.36□□□□□ -0.59
NUP54-203ENST00000504173 MAFGO15525 162 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 ARIH2O95376 493 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 ZSCAN22P10073 491 aaPredicted RBP11.36□□□□□ -0.59
NUP54-203ENST00000504173 TGFB3P10600 412 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 RARBP10826 455 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 SMPD1P17405 629 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 CYP3A7P24462 503 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 TRAPPC10P48553 1259 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 RESTQ13127 1097 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 SEMA3FQ13275 785 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 PKP1Q13835 747 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 Q4G0T1 1027 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 DUSP28Q4G0W2 176 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 TTC38Q5R3I4 469 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 CCDC62Q6P9F0 684 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 ARRDC4Q8NCT1 418 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 KCNH7Q9NS40 1196 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 PKD2L1Q9P0L9 805 aa11.36□□□□□ -0.59
NUP54-203ENST00000504173 DDX25Q9UHL0 483 aaKnown RBP11.36□□□□□ -0.59
NUP54-203ENST00000504173 DDX41Q9UJV9 622 aaKnown RBP11.36□□□□□ -0.59
NUP54-203ENST00000504173 ADCY6O43306 1168 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 DUSP11O75319 330 aaKnown RBP11.35□□□□□ -0.59
NUP54-203ENST00000504173 CLTBP09497 229 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 ARP10275 920 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 POU3F3P20264 500 aaPredicted RBP11.35□□□□□ -0.59
NUP54-203ENST00000504173 UBA1P22314 1058 aaKnown RBP11.35□□□□□ -0.59
NUP54-203ENST00000504173 NEDD9Q14511 834 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 RAB30Q15771 203 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 LY6KQ17RY6 165 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 RILPL1Q5EBL4 403 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 TMEM63BQ5T3F8 832 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 GJC2Q5T442 439 aaPredicted RBP11.35□□□□□ -0.59
NUP54-203ENST00000504173 PPP4R3AQ6IN85 833 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 TLK2Q86UE8 772 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 OR6J1Q8NGC5 347 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 COPS5Q92905 334 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 LENG9Q96B70 501 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 MBOAT7Q96N66 472 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 ZNF577Q9BSK1 485 aa11.35□□□□□ -0.59
NUP54-203ENST00000504173 ZSCAN16Q9H4T2 348 aaPredicted RBP11.35□□□□□ -0.59
NUP54-203ENST00000504173 AGO4Q9HCK5 861 aaKnown RBP11.35□□□□□ -0.59
NUP54-203ENST00000504173 KBTBD13C9JR72 458 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 WNT7AO00755 349 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 DYNC1LI2O43237 492 aaPredicted RBP11.34□□□□□ -0.59
NUP54-203ENST00000504173 SLC37A4O43826 429 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 MARCH6O60337 910 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 SORBS3O60504 671 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 NEMFO60524 1076 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 ATP9AO75110 1047 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 GGPS1O95749 300 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 F13A1P00488 732 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 GH1P01241 217 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 KCNA2P16389 499 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 MCM7P33993 719 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 TOB1P50616 345 aaPredicted RBP11.34□□□□□ -0.59
NUP54-203ENST00000504173 SP2Q02086 613 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 TLE2Q04725 743 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 NBR1Q14596 966 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 ZNF174Q15697 407 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 MYSM1Q5VVJ2 828 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 DHX37Q8IY37 1157 aaKnown RBP11.34□□□□□ -0.59
NUP54-203ENST00000504173 GIMAP8Q8ND71 665 aaPredicted RBP11.34□□□□□ -0.59
NUP54-203ENST00000504173 IPO9Q96P70 1041 aaKnown RBP11.34□□□□□ -0.59
NUP54-203ENST00000504173 UIMC1Q96RL1 719 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 SENP7Q9BQF6 1050 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 SDF4Q9BRK5 362 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 AP5M1Q9H0R1 490 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 MLXIPQ9HAP2 919 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 SPC25Q9HBM1 224 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 CD320Q9NPF0 282 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 XPNPEP3Q9NQH7 507 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 GNEQ9Y223 722 aaKnown RBP11.34□□□□□ -0.59
NUP54-203ENST00000504173 ZNF318Q5VUA4 2279 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 SYNRGQ9UMZ2 1314 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 CACNA1BQ00975 2339 aa11.34□□□□□ -0.59
NUP54-203ENST00000504173 IPO5O00410 1097 aaKnown RBP11.33□□□□□ -0.6
NUP54-203ENST00000504173 MSH4O15457 936 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 BAG4O95429 457 aaKnown RBP11.33□□□□□ -0.6
NUP54-203ENST00000504173 BRD1O95696 1058 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 PGK1P00558 417 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 MYCNP04198 464 aaPredicted RBP11.33□□□□□ -0.6
NUP54-203ENST00000504173 C6orf222P0C671 652 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms