RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 CD209Q9NNX6 404 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 KCNK9Q9NPC2 374 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 MYH8P13535 1937 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 LMO7Q8WWI1 1683 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 SPATA31A1Q5TZJ5 1347 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 GOLGA6L10A0A0M3HER8 536 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 CFBP00751 764 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 TAL1P17542 331 aaPredicted RBP13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 MRPL12P52815 198 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 MAGOHP61326 146 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 NT5DC1Q5TFE4 455 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 GPBP1Q86WP2 473 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 CCDC13Q8IYE1 715 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 MAGOHBQ96A72 148 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 MLXIPLQ9NP71 852 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 SAMD15Q9P1V8 674 aa13.51□□□□□ -0.25
SHROOM3-208ENST00000486758 TBCAO75347 108 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 MYO1EQ12965 1108 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 LRCH2Q5VUJ6 765 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 WDR59Q6PJI9 974 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 ADSSL1Q8N142 457 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 RBM17Q96I25 401 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 IL17RBQ9NRM6 502 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 DDX25Q9UHL0 483 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 ANO9A1A5B4 782 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 TRAPPC10P48553 1259 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 RBM26Q5T8P6 1007 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 PAPD7Q5XG87 772 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 APTXQ7Z2E3 356 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 FBXO33Q7Z6M2 555 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 DGKHQ86XP1 1220 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 SYCP3Q8IZU3 236 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 SCAF8Q9UPN6 1271 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 PCDHA1Q9Y5I3 950 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 RPS6KA4O75676 772 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 AKR1B1P15121 316 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 CCNE1P24864 410 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 HOXA13P31271 388 aaPredicted RBP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 ELF1P32519 619 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 STAT3P40763 770 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 AARSP49588 968 aaKnown RBP eCLIP13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 MDM1Q8TC05 714 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 SLC40A1Q9NP59 571 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 TNS2Q63HR2 1409 aa13.5□□□□□ -0.25
SHROOM3-208ENST00000486758 E9PMD0 336 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 RPS6KA5O75582 802 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 DHX9Q08211 1270 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 SF3B3Q15393 1217 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 ZKSCAN8Q15776 578 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 CCDC174Q6PII3 467 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 SLC30A10Q6XR72 485 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 PEX26Q7Z412 305 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 CCDC84Q86UT8 332 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 ANKRD42Q8N9B4 389 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 LRRC45Q96CN5 670 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 EPN3Q9H201 632 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 NPHP3-ACAD11A0A0J9YXS1 232 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 GRAPQ13588 217 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 RUFY4Q6ZNE9 571 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 MYCBPAPQ8TBZ2 947 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 GRAPLQ8TC17 118 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 USP17L10C9JJH3 530 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 MDH1P40925 334 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 HAUS3Q68CZ6 603 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 ATP6V1G3Q96LB4 118 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 THAP9Q9H5L6 903 aa13.49□□□□□ -0.25
SHROOM3-208ENST00000486758 CLIC2O15247 247 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 ASIC2Q16515 512 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 IL17AQ16552 155 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 ZNF384Q8TF68 577 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 DDX12PQ92771 950 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 SH2D4AQ9H788 454 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 HOMER2Q9NSB8 354 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 PANK4Q9NVE7 773 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 BARHL2Q9NY43 387 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 RASA1P20936 1047 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 PBX1P40424 430 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CREG2Q8IUH2 290 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 MYOCDQ8IZQ8 938 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CTNNBL1Q8WYA6 563 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 MRRFQ96E11 262 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 MTRQ99707 1265 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 LBHD1Q9BQE6 289 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 GMNCA6NCL1 334 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CYTH3O43739 400 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 ORC4O43929 436 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 SORBS3O60504 671 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 SRGNP10124 158 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CALRP27797 417 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 PTGISQ16647 500 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 FAM26FQ5R3K3 315 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 KCNV1Q6PIU1 500 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 VPS36Q86VN1 386 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 SUGP1Q8IWZ8 645 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 PARP9Q8IXQ6 854 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CCDC63Q8NA47 563 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CUL5Q93034 780 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 CYFIP2Q96F07 1278 aa13.48□□□□□ -0.25
SHROOM3-208ENST00000486758 ELAC2Q9BQ52 826 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms