RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SGSM2O43147 1006 aa15.99■□□□□ 0.15
SQSTM1-208ENST00000485412 TGFB3P10600 412 aa15.99■□□□□ 0.15
SQSTM1-208ENST00000485412 RALYLQ86SE5 291 aaKnown RBP15.99■□□□□ 0.15
SQSTM1-208ENST00000485412 CMTR1Q8N1G2 835 aaKnown RBP15.99■□□□□ 0.15
SQSTM1-208ENST00000485412 GPR20Q99678 358 aa15.99■□□□□ 0.15
SQSTM1-208ENST00000485412 COL4A6Q14031 1691 aa15.99■□□□□ 0.15
SQSTM1-208ENST00000485412 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 CAND2O75155 1236 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 PLEKHA8P1O95397 391 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 RXRAP19793 462 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 ICAM3P32942 547 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 ZP2Q05996 745 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 METTL7BQ6UX53 244 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 RAB11FIP4Q86YS3 637 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 SAMD3Q8N6K7 520 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 NCOA7Q8NI08 942 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 IFIH1Q9BYX4 1025 aaKnown RBP15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 KCNH6Q9H252 994 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 LY9Q9HBG7 655 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 KIAA1671Q9BY89 1806 aa15.98■□□□□ 0.15
SQSTM1-208ENST00000485412 POTEB3A0JP26 581 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 ERICH2A1L162 156 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 NOP56O00567 594 aaKnown RBP15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 MEIS2O14770 477 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 CTNNB1P35222 781 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 NHLH1Q02575 133 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 UTP14CQ5TAP6 766 aaKnown RBP15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 POTEBQ6S5H4 581 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 RPAINQ86UA6 219 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 ADHFE1Q8IWW8 467 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 ZNF654Q8IZM8 581 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 FIBCD1Q8N539 461 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 LMBR1Q8WVP7 490 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 APBB2Q92870 758 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 FBXL18Q96ME1 805 aa15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 UPF3BQ9BZI7 483 aaKnown RBP15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 RBM8AQ9Y5S9 174 aaKnown RBP15.97■□□□□ 0.15
SQSTM1-208ENST00000485412 hCG_1642624A0A1W2PR95 340 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 FIBPO43427 364 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 NCK2O43639 380 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 GNAT1P11488 350 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 ADAM17P78536 824 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 RUFY4Q6ZNE9 571 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 CATIPQ7Z7H3 387 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 MAP4K1Q92918 833 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 IL17RAQ96F46 866 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 SPZ1Q9BXG8 430 aa15.96■□□□□ 0.15
SQSTM1-208ENST00000485412 C19orf67A6NJJ6 358 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 ATP9AO75110 1047 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 ARHGAP4P98171 946 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 COL19A1Q14993 1142 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 CLUL1Q15846 466 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 GNPTABQ3T906 1256 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 PCNX4Q63HM2 1172 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 SRBD1Q8N5C6 995 aaKnown RBP15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 RUFY2Q8WXA3 655 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 ZBTB10Q96DT7 871 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 POP1Q99575 1024 aaKnown RBP15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 RWDD3Q9Y3V2 267 aa15.95■□□□□ 0.14
SQSTM1-208ENST00000485412 PRC1O43663 620 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 RB1P06400 928 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 IRS1P35568 1242 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 TRAF1Q13077 416 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 NEDD9Q14511 834 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 SART3Q15020 963 aaKnown RBP15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 UBE2SQ16763 222 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 SMARCC2Q8TAQ2 1214 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 MFSD14AQ96MC6 490 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 C11orf84Q9BUA3 381 aaPredicted RBP15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 USP26Q9BXU7 913 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 LMAN2LQ9H0V9 348 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 PKD2L1Q9P0L9 805 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 ZNF215Q9UL58 517 aaPredicted RBP15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 ZNF318Q5VUA4 2279 aa15.94■□□□□ 0.14
SQSTM1-208ENST00000485412 SH2B2O14492 632 aaPredicted RBP15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 STAM2O75886 525 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 DDAH1O94760 285 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 CSPG5O95196 566 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 CHRNA1P02708 482 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 KCNA2P16389 499 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 MARK3P27448 753 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 LTBRP36941 435 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 HFE2Q6ZVN8 426 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 RRP36Q96EU6 259 aaKnown RBP15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 LRRC2Q9BYS8 371 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 TTC3P53804 2025 aa15.93■□□□□ 0.14
SQSTM1-208ENST00000485412 GSTTP1A0A1W2PQM5 241 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 C5orf67F2Z3F1 127 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 PIK3CDO00329 1044 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 GRM6O15303 877 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 MBTPS2O43462 519 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 LINC00271P0C7V0 271 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 GHRP10912 638 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 ITGB5P18084 799 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 TCF7P36402 384 aaPredicted RBP15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 BMPR1AP36894 532 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 HYAL1Q12794 435 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 SMAD2Q15796 467 aaKnown RBP15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 FAM26DQ5JW98 314 aa15.92■□□□□ 0.14
SQSTM1-208ENST00000485412 SKAP1Q86WV1 359 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms