RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 KRT37O76014 449 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 COL6A2P12110 1019 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 KRT15P19012 456 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 VCAM1P19320 739 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 GPR3P46089 330 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 KIF11P52732 1056 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 EPHA5P54756 1037 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 DUSP4Q13115 394 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 GTF2H3Q13889 308 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 EMC4Q5J8M3 183 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 ZZZ3Q8IYH5 903 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 CMTR2Q8IYT2 770 aaKnown RBP6.75□□□□□ -1.33
UPF3B-203ENST00000478840 MORC4Q8TE76 937 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 FBXO41Q8TF61 875 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 MISP3Q96FF7 219 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 BTG4Q9NY30 223 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 DSEQ9UL01 958 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA12O60330 932 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 LTFP02788 710 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 FUCA1P04066 466 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PF4V1P10720 104 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 CYP2C19P33261 490 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 MINDY4Q4G0A6 757 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PGM2L1Q6PCE3 622 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 FRMD7Q6ZUT3 714 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 TPH2Q8IWU9 490 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PIP4K2CQ8TBX8 421 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 SYTL4Q96C24 671 aaPredicted RBP6.74□□□□□ -1.33
UPF3B-203ENST00000478840 AIFM3Q96NN9 605 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCIF1Q9H4Z3 704 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 TOMM22Q9NS69 142 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 OBP2AQ9NY56 170 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 USP36Q9P275 1121 aaKnown RBP6.74□□□□□ -1.33
UPF3B-203ENST00000478840 EBF1Q9UH73 591 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 NOC2LQ9Y3T9 749 aaKnown RBP6.74□□□□□ -1.33
UPF3B-203ENST00000478840 NUB1Q9Y5A7 615 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA9Q9Y5G4 932 aaKnown RBP6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA8Q9Y5G5 932 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA7Q9Y5G6 932 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA6Q9Y5G7 932 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA3Q9Y5H0 932 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 PCDHGA2Q9Y5H1 932 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 MRFAP1Q9Y605 127 aa6.74□□□□□ -1.33
UPF3B-203ENST00000478840 KRIT1O00522 736 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 EIF3JO75822 258 aaKnown RBP6.73□□□□□ -1.33
UPF3B-203ENST00000478840 ZGLP1P0C6A0 271 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 CD40P25942 277 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 SDHAP31040 664 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 GJA4P35212 333 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 SLC6A11P48066 632 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 FNTBP49356 437 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 TCIRG1Q13488 830 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 BIRC2Q13490 618 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 HDAC1Q13547 482 aaPredicted RBP6.73□□□□□ -1.33
UPF3B-203ENST00000478840 MOGSQ13724 837 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 ODF1Q14990 250 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 PDCD1Q15116 288 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 EPHA7Q15375 998 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 AOC3Q16853 763 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 GORABQ5T7V8 394 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 ESRP1Q6NXG1 681 aaKnown RBP6.73□□□□□ -1.33
UPF3B-203ENST00000478840 PNMA8AQ86V59 439 aaPredicted RBP6.73□□□□□ -1.33
UPF3B-203ENST00000478840 SMC5Q8IY18 1101 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 CMIPQ8IY22 773 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 LZTR1Q8N653 840 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 SSH1Q8WYL5 1049 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 C16orf92Q96LL3 132 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 ACAP3Q96P50 834 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 RPS6KC1Q96S38 1066 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 PRDM11Q9NQV5 511 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 KCNH7Q9NS40 1196 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 MKS1Q9NXB0 559 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 RWDD3Q9Y3V2 267 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 ATP23Q9Y6H3 246 aa6.73□□□□□ -1.33
UPF3B-203ENST00000478840 KLHL33A6NCF5 533 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 GOLGA8AA7E2F4 631 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 GOLGA8BA8MQT2 603 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 SCDO00767 359 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 KCNK3O14649 394 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 MAFKO60675 156 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 TADA3O75528 432 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 CT47B1P0C2W7 299 aaPredicted RBP6.72□□□□□ -1.33
UPF3B-203ENST00000478840 LPOP22079 712 aaPredicted RBP6.72□□□□□ -1.33
UPF3B-203ENST00000478840 PTX3P26022 381 aaPredicted RBP6.72□□□□□ -1.33
UPF3B-203ENST00000478840 SCAND1P57086 179 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 RTP1P59025 263 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 PURAQ00577 322 aaKnown RBP6.72□□□□□ -1.33
UPF3B-203ENST00000478840 SEC23AQ15436 765 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 CHRNA2Q15822 529 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 HSF5Q4G112 596 aaPredicted RBP6.72□□□□□ -1.33
UPF3B-203ENST00000478840 KCTD1Q719H9 257 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 EPM2AIP1Q7L775 607 aaPredicted RBP6.72□□□□□ -1.33
UPF3B-203ENST00000478840 EXOC8Q8IYI6 725 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 SAMD3Q8N6K7 520 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 HSPBAP1Q96EW2 488 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 PDLIM7Q9NR12 457 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 ACSL6Q9UKU0 697 aa6.72□□□□□ -1.33
UPF3B-203ENST00000478840 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
UPF3B-203ENST00000478840 VSTM5A8MXK1 200 aa6.71□□□□□ -1.34
UPF3B-203ENST00000478840 ERC2O15083 957 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms