RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LMBR1Q8WVP7 490 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TOP1MTQ969P6 601 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TGS1Q96RS0 853 aaKnown RBP14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ZBED2Q9BTP6 218 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 LRRC2Q9BYS8 371 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 COG5Q9UP83 839 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 INSL6Q9Y581 213 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SLC12A7Q9Y666 1083 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 NRCAMQ92823 1304 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 COL4A6Q14031 1691 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CHRNA1P02708 482 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 GNAT1P11488 350 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 APOA5Q6Q788 366 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 NFXL1Q6ZNB6 911 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MICALL1Q8N3F8 863 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CDHR1Q96JP9 859 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 UHRF1Q96T88 793 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 EHMT1Q9H9B1 1298 aa14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 FAM217BQ9NTX9 383 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ZNF215Q9UL58 517 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 hCG_1642624A0A1W2PR95 340 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MBLAC1A4D2B0 266 aaPredicted RBP14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 TCF7P36402 384 aaPredicted RBP14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 KCNQ1P51787 676 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 AAK1Q2M2I8 961 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MARCH8Q5T0T0 291 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 TYW1BQ6NUM6 668 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SKAP1Q86WV1 359 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RAB11FIP4Q86YS3 637 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RASEFQ8IZ41 740 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SEPT1Q8WYJ6 367 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 PCYT2Q99447 389 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 JADE2Q9NQC1 790 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 BRPF3Q9ULD4 1205 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 PCDHA6Q9UN73 950 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 PCDHA8Q9Y5H6 950 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CNTNAP5Q8WYK1 1306 aa14.07□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 NLRC5Q86WI3 1866 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 LOXHD1Q8IVV2 1947 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 AMHP03971 560 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MGAT3Q09327 533 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 UBE2SQ16763 222 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ADCK5Q3MIX3 580 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 UTP14CQ5TAP6 766 aaKnown RBP14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 WWC2Q6AWC2 1192 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CCDC82Q8N4S0 544 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 GDPD5Q8WTR4 605 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SEPT8Q92599 483 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 KCNB2Q92953 911 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 HLA-CQ95604 372 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 NEK1Q96PY6 1258 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ANO2Q9NQ90 1003 aa14.06□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 LINC00271P0C7V0 271 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CLK2P49760 499 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ARHGAP4P98171 946 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MTMR1Q13613 665 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 FAM117BQ6P1L5 589 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 TAF2Q6P1X5 1199 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RUFY4Q6ZNE9 571 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 DHX32Q7L7V1 743 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MICU3Q86XE3 530 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MYOCDQ8IZQ8 938 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CYP2W1Q8TAV3 490 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 APBB2Q92870 758 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 NECAB3Q96P71 396 aaPredicted RBP14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MXRA8Q9BRK3 442 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 C17orf80Q9BSJ5 609 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RIC8AQ9NPQ8 531 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RBM28Q9NW13 759 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ERAP1Q9NZ08 941 aa14.05□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RALGAPA2Q2PPJ7 1873 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SPDYE3A6NKU9 549 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 ATG7O95352 703 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CTSHP09668 335 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RCAN1P53805 252 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SP4Q02446 784 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RNF20Q5VTR2 975 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CENPQQ7L2Z9 268 aaPredicted RBP14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CRIPAKQ8N1N5 446 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CRYGNQ8WXF5 182 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SMARCAD1Q9H4L7 1026 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 RC3H2Q9HBD1 1191 aaKnown RBP14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 KCNH7Q9NS40 1196 aa14.04□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MEIS1O00470 390 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 CDC27P30260 824 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 PPFIA1Q13136 1202 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 LPIN1Q14693 890 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SKIV2LQ15477 1246 aaKnown RBP14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 GRIK4Q16099 956 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 EPC2Q52LR7 807 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 PPP1R18Q6NYC8 613 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 HEATR3Q7Z4Q2 680 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 FBXL16Q8N461 479 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 TCEANC2Q96MN5 208 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 SAMD11Q96NU1 681 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 IFIH1Q9BYX4 1025 aaKnown RBP14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 BARHL2Q9NY43 387 aa14.03□□□□□ -0.16
MSH5-SAPCD1-205ENST00000476085 MTUS1Q9ULD2 1270 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms