RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 RNF26Q9BY78 433 aaPredicted RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 GTPBP4Q9BZE4 634 aaKnown RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 UBIAD1Q9Y5Z9 338 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 SZT2Q5T011 3432 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 TMEM265A0A087WTH1 108 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 ESYT2A0FGR8 921 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 H3BRB1 525 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 LGALS2P05162 132 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 ITGB5P18084 799 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 PDIA3P30101 505 aaKnown RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 GDF6Q6KF10 455 aaPredicted RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 Q7L0L9 218 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 AFAP1L1Q8TED9 768 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 HERVK_113Q902F9 699 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 GPR20Q99678 358 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 C16orf70Q9BSU1 422 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 TUT1Q9H6E5 874 aaKnown RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 JADE2Q9NQC1 790 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 HDAC6Q9UBN7 1215 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZNF215Q9UL58 517 aaPredicted RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 PARNO95453 639 aaKnown RBP13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 IQCF3P0C7M6 154 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 IFNAR1P17181 557 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 GNA11P29992 359 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 RBL2Q08999 1139 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 TOB2Q14106 344 aaPredicted RBP13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 PPP1R13LQ8WUF5 828 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZNF274Q96GC6 653 aaPredicted RBP13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 SCLYQ96I15 445 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 ANO3Q9BYT9 981 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 C6orf50Q9HD87 102 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 MTMR10Q9NXD2 777 aa13.12□□□□□ -0.31
HLA-DOB-208ENST00000475235 SCN10AQ9Y5Y9 1956 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 ACTN1P12814 892 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 KCNA2P16389 499 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 SREBF1P36956 1147 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 SSR1P43307 286 aaKnown RBP13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 RBM25P49756 843 aaKnown RBP13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 CLK2P49760 499 aaKnown RBP13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 TERF1P54274 439 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 PTK7Q13308 1070 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 NTRK3Q16288 839 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 DNTTIP2Q5QJE6 756 aaKnown RBP13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 CPLX2Q6PUV4 134 aaKnown RBP13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 RINLQ6ZS11 566 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 TRIM22Q8IYM9 498 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 CCDC148Q8NFR7 591 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 MXRA8Q9BRK3 442 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 UPF3BQ9BZI7 483 aaKnown RBP13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZMYND12Q9H0C1 365 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 PDRG1Q9NUG6 133 aa13.11□□□□□ -0.31
HLA-DOB-208ENST00000475235 C17orf102A2RUQ5 167 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 CPLX1O14810 134 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 ATP9AO75110 1047 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 GNAT1P11488 350 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 SELPP16109 830 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 CALRP27797 417 aaKnown RBP13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 CCT2P78371 535 aaKnown RBP13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 PKN1Q16512 942 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 CEP55Q53EZ4 464 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 OTOP2Q7RTS6 562 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 BICD2Q8TD16 824 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 SEPT1Q8WYJ6 367 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 PHKBQ93100 1093 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 CTAGE1Q96RT6 745 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 SLC26A6Q9BXS9 759 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 BCAS3Q9H6U6 928 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 KCNH7Q9NS40 1196 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 STXBP5LQ9Y2K9 1186 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 KIAA1217Q5T5P2 1943 aa13.1□□□□□ -0.31
HLA-DOB-208ENST00000475235 TCF7P36402 384 aaPredicted RBP13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZNF76P36508 570 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 SP4Q02446 784 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 LRRC8DQ7L1W4 858 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 NIPA1Q7RTP0 329 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 DEFB128Q7Z7B8 93 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 REXO1Q8N1G1 1221 aaKnown RBP13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 PGBD1Q96JS3 809 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 SDF4Q9BRK5 362 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 SH3GLB2Q9NR46 395 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 SLC4A7Q9Y6M7 1214 aa13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 BAZ2BQ9UIF8 2168 aaKnown RBP13.09□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZBBXA8MT70 800 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 SMIM10L2AP0DMW4 78 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 SMIM10L2BP0DMW5 78 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 CKBP12277 381 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 DNAJB2P25686 324 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 HOXC8P31273 242 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 ARHGAP4P98171 946 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 SSRP1Q08945 709 aaKnown RBP13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 RAB30Q15771 203 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 JAKMIP3Q5VZ66 844 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 SERINC5Q86VE9 423 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 IFNLR1Q8IU57 520 aaPredicted RBP13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 DHX38Q92620 1227 aaKnown RBP13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 ATP6V0A1Q93050 837 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 TIFAQ96CG3 184 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 FTOQ9C0B1 505 aaKnown RBP eCLIP13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 SEMA6BQ9H3T3 888 aa13.08□□□□□ -0.31
HLA-DOB-208ENST00000475235 NCOA5Q9HCD5 579 aaKnown RBP13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms