RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 GALNT17Q6IS24 598 aa21.54■■□□□ 1.04
PTCD3-210ENST00000473829 DHX38Q92620 1227 aaKnown RBP21.54■■□□□ 1.04
PTCD3-210ENST00000473829 DHX15O43143 795 aaKnown RBP21.53■■□□□ 1.04
PTCD3-210ENST00000473829 CD2BP2O95400 341 aaKnown RBP21.53■■□□□ 1.04
PTCD3-210ENST00000473829 FOSBP53539 338 aa21.53■■□□□ 1.04
PTCD3-210ENST00000473829 PRR16Q569H4 304 aa21.53■■□□□ 1.04
PTCD3-210ENST00000473829 SEPT1Q8WYJ6 367 aa21.53■■□□□ 1.04
PTCD3-210ENST00000473829 WASF1Q92558 559 aa21.53■■□□□ 1.04
PTCD3-210ENST00000473829 PCYT2Q99447 389 aa21.53■■□□□ 1.04
PTCD3-210ENST00000473829 SDF4Q9BRK5 362 aa21.53■■□□□ 1.04
PTCD3-210ENST00000473829 DDX39AO00148 427 aaKnown RBP21.52■■□□□ 1.04
PTCD3-210ENST00000473829 CCNE2O96020 404 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 SMIM10L2AP0DMW4 78 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 SMIM10L2BP0DMW5 78 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 XBP1P17861 261 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 HOXC8P31273 242 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 ACTR2P61160 394 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 SETQ01105 290 aaPredicted RBP21.52■■□□□ 1.04
PTCD3-210ENST00000473829 C16orf59Q7L2K0 433 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 WNT8BQ93098 351 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 SCLYQ96I15 445 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 BACH2Q9BYV9 841 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 NOD1Q9Y239 953 aa21.52■■□□□ 1.04
PTCD3-210ENST00000473829 RBAK-RBAKDNI3L0D1 243 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 IPO5O00410 1097 aaKnown RBP21.51■■□□□ 1.03
PTCD3-210ENST00000473829 TDP2O95551 362 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 USP11P51784 963 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 NONOQ15233 471 aaKnown RBP eCLIP21.51■■□□□ 1.03
PTCD3-210ENST00000473829 EARS2Q5JPH6 523 aaKnown RBP21.51■■□□□ 1.03
PTCD3-210ENST00000473829 KRT25Q7Z3Z0 450 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 TMEM199Q8N511 208 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 VWCEQ96DN2 955 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 ZSCAN31Q96LW9 406 aaPredicted RBP21.51■■□□□ 1.03
PTCD3-210ENST00000473829 ZNF577Q9BSK1 485 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 RNPEPQ9H4A4 650 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 SH2B1Q9NRF2 756 aaPredicted RBP21.51■■□□□ 1.03
PTCD3-210ENST00000473829 EMSYQ7Z589 1322 aa21.51■■□□□ 1.03
PTCD3-210ENST00000473829 FAM205CA6NFA0 338 aa21.5■■□□□ 1.03
PTCD3-210ENST00000473829 LGR5O75473 907 aa21.5■■□□□ 1.03
PTCD3-210ENST00000473829 MARK3P27448 753 aa21.5■■□□□ 1.03
PTCD3-210ENST00000473829 PPIGQ13427 754 aaKnown RBP eCLIP21.5■■□□□ 1.038e-10■□□□□ 9.5
PTCD3-210ENST00000473829 INF2Q27J81 1249 aa21.5■■□□□ 1.03
PTCD3-210ENST00000473829 TNFRSF25Q93038 417 aa21.5■■□□□ 1.03
PTCD3-210ENST00000473829 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.5■■□□□ 1.033e-8■□□□□ 9.8
PTCD3-210ENST00000473829 ZNF215Q9UL58 517 aaPredicted RBP21.5■■□□□ 1.03
PTCD3-210ENST00000473829 MSH4O15457 936 aa21.49■■□□□ 1.03
PTCD3-210ENST00000473829 ACRP10323 421 aa21.49■■□□□ 1.03
PTCD3-210ENST00000473829 NR5A1Q13285 461 aa21.49■■□□□ 1.03
PTCD3-210ENST00000473829 TRIM71Q2Q1W2 868 aaKnown RBP21.49■■□□□ 1.03
PTCD3-210ENST00000473829 GJA10Q969M2 543 aa21.49■■□□□ 1.03
PTCD3-210ENST00000473829 LRCH3Q96II8 777 aa21.49■■□□□ 1.03
PTCD3-210ENST00000473829 WDR81Q562E7 1941 aa21.49■■□□□ 1.03
PTCD3-210ENST00000473829 CYP3A7-CYP3A51PA0A087WV96 503 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 C17orf102A2RUQ5 167 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 PITPNM1O00562 1244 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 ST18O60284 1047 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 ATG7O95352 703 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 MMP1P03956 469 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 CYP3A7P24462 503 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 LRIT3Q3SXY7 679 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 KRT40Q6A162 431 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 PIK3AP1Q6ZUJ8 805 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 LMBR1Q8WVP7 490 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 GLG1Q92896 1179 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 MBOAT7Q96N66 472 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 LLPHQ9BRT6 129 aaKnown RBP21.48■■□□□ 1.03
PTCD3-210ENST00000473829 IL23AQ9NPF7 189 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 SETD4Q9NVD3 440 aa21.48■■□□□ 1.03
PTCD3-210ENST00000473829 KAT6AQ92794 2004 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 CCDC194A0A1B0GVG4 234 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 TREHO43280 583 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 KRT2P35908 639 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 RBL2Q08999 1139 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 PTK7Q13308 1070 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 BFSP2Q13515 415 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 Q4G0T1 1027 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 TMEM240Q5SV17 173 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 ABHD15Q6UXT9 468 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 SERINC5Q86VE9 423 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 SMARCAD1Q9H4L7 1026 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 ERAP1Q9NZ08 941 aa21.47■■□□□ 1.03
PTCD3-210ENST00000473829 IGKV6D-21A0A0A0MT36 114 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 SLC37A4O43826 429 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 IQCF3P0C7M6 154 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 ADAM17P78536 824 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 GUCY1B3Q02153 619 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 LETM2Q2VYF4 491 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 MOXD1Q6UVY6 613 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 ZNF365Q70YC5 407 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 CCDC60Q8IWA6 550 aaPredicted RBP21.46■■□□□ 1.03
PTCD3-210ENST00000473829 CAGE1Q8TC20 777 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 SLC5A5Q92911 643 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 ATP6V0A1Q93050 837 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 RNPC3Q96LT9 517 aaKnown RBP21.46■■□□□ 1.03
PTCD3-210ENST00000473829 TBC1D22BQ9NU19 505 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 TET1Q8NFU7 2136 aa21.46■■□□□ 1.03
PTCD3-210ENST00000473829 BTBD18B2RXH4 712 aa21.45■■□□□ 1.02
PTCD3-210ENST00000473829 CKBP12277 381 aa21.45■■□□□ 1.02
PTCD3-210ENST00000473829 TRAF7Q6Q0C0 670 aa21.45■■□□□ 1.02
PTCD3-210ENST00000473829 NEK8Q86SG6 692 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms