RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 RASGRF1Q13972 1273 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 KIZQ2M2Z5 673 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 MTERF2Q49AM1 385 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 PRR31Q5SQ13 230 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 NBPF6Q5VWK0 638 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 STYK1Q6J9G0 422 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 CYP4F22Q6NT55 531 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 TEPPQ6URK8 271 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 NSMFQ6X4W1 530 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 LBX2Q6XYB7 198 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 TTLL7Q6ZT98 887 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 LIMS2Q7Z4I7 341 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 TTLL6Q8N841 843 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 PIP4K2CQ8TBX8 421 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 PHOSPHO1Q8TCT1 267 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ADAMTS17Q8TE56 1095 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 DCAF4Q8WV16 495 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ZNF669Q96BR6 464 aaPredicted RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 TOE1Q96GM8 510 aaKnown RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ZNF764Q96H86 408 aaPredicted RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 NBPF4Q96M43 638 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 CRAMP1Q96RY5 1269 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ZFYVE21Q9BQ24 234 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 SPATA9Q9BWV2 254 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 JAM3Q9BX67 310 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 KLC2Q9H0B6 622 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 NGRNQ9NPE2 291 aaKnown RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ASH2LQ9UBL3 628 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 PFDN2Q9UHV9 154 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ASXL2Q76L83 1435 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 NPIPB8E9PQR5 432 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SLC27A2O14975 620 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 DIAPH1O60610 1272 aaKnown RBP2.28□□□□□ -2.04
UBXN4-207ENST00000471246 PPFIA2O75334 1257 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SOD2P04179 222 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 GNAT1P11488 350 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 ZNF28P17035 718 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 GTF2F1P35269 517 aaKnown RBP eCLIP2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SUMO1P63165 101 aaKnown RBP2.28□□□□□ -2.04
UBXN4-207ENST00000471246 DPTQ07507 201 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SERINC3Q13530 473 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 RASA3Q14644 834 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 ICAM4Q14773 271 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 RGL3Q3MIN7 710 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 FAM26FQ5R3K3 315 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 LCE1EQ5T753 118 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 IGFL4Q6B9Z1 124 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 TMC5Q6UXY8 1006 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 OTOP3Q7RTS5 596 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 PALM2Q8IXS6 379 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 IFNL3Q8IZI9 196 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 TTLL11Q8NHH1 800 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 UHMK1Q8TAS1 419 aaKnown RBP2.28□□□□□ -2.04
UBXN4-207ENST00000471246 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.28□□□□□ -2.04
UBXN4-207ENST00000471246 CLIC6Q96NY7 704 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 WRNIP1Q96S55 665 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 KCNJ15Q99712 375 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SMOC1Q9H4F8 434 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 IPPKQ9H8X2 491 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SLC6A20Q9NP91 592 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 SIRPGQ9P1W8 387 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 RBPJLQ9UBG7 517 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 PPP1R1BQ9UD71 204 aaPredicted RBP2.28□□□□□ -2.04
UBXN4-207ENST00000471246 WASF3Q9UPY6 502 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 TRAF6Q9Y4K3 522 aa2.28□□□□□ -2.04
UBXN4-207ENST00000471246 TRBV23-1A0A0A0MS06 115 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 FAM47E-STBD1D6RA91 191 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 DDX3XO00571 662 aaKnown RBP eCLIP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 NKRFO15226 690 aaKnown RBP eCLIP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 LRG1P02750 347 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 LTFP02788 710 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 C6orf222P0C671 652 aaPredicted RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 COL6A2P12110 1019 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 GRIN1Q05586 938 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 SPIRE1Q08AE8 756 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 TUSC3Q13454 348 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 HABP4Q5JVS0 413 aaKnown RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 FAM209AQ5JX71 171 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 PRAMEF18Q5VWM3 479 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 FOXB2Q5VYV0 432 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 MCTP2Q6DN12 878 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 VASNQ6EMK4 673 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 DPH6Q7L8W6 267 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 MAMDC2Q7Z304 686 aaPredicted RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 MTDHQ86UE4 582 aaKnown RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 PROSER1Q86XN7 944 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 RBM12BQ8IXT5 1001 aaKnown RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 ZCCHC14Q8WYQ9 949 aaKnown RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 ARMC5Q96C12 935 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 ZG16BQ96DA0 208 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 EXOC2Q96KP1 924 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 DEPDC7Q96QD5 511 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 TMEM209Q96SK2 561 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 CDK5RAP1Q96SZ6 601 aaKnown RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 CDC6Q99741 560 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 ALG1Q9BT22 464 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 HIRIP3Q9BW71 556 aaPredicted RBP2.27□□□□□ -2.05
UBXN4-207ENST00000471246 ZNF341Q9BYN7 854 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 CCDC113Q9H0I3 377 aa2.27□□□□□ -2.05
UBXN4-207ENST00000471246 CD248Q9HCU0 757 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms