RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 ADAM17P78536 824 aa20.07■□□□□ 0.8
COL7A1-208ENST00000470076 TFF2Q03403 129 aa20.07■□□□□ 0.8
COL7A1-208ENST00000470076 FAM117BQ6P1L5 589 aa20.07■□□□□ 0.8
COL7A1-208ENST00000470076 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.07■□□□□ 0.8
COL7A1-208ENST00000470076 MICU3Q86XE3 530 aa20.07■□□□□ 0.8
COL7A1-208ENST00000470076 LMBR1Q8WVP7 490 aa20.07■□□□□ 0.8
COL7A1-208ENST00000470076 TELO2Q9Y4R8 837 aa20.07■□□□□ 0.8
COL7A1-208ENST00000470076 TCF20Q9UGU0 1960 aaKnown RBP20.06■□□□□ 0.8
COL7A1-208ENST00000470076 hCG_1642624A0A1W2PR95 340 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 MAFGO15525 162 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 ATP9AO75110 1047 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 CTSHP09668 335 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 BMP1P13497 986 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 ITGB5P18084 799 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 ARHGAP4P98171 946 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 MTMR1Q13613 665 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 UBE2SQ16763 222 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 HEATR3Q7Z4Q2 680 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 TEX2Q8IWB9 1127 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 MYOCDQ8IZQ8 938 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 NEK1Q96PY6 1258 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 EHMT1Q9H9B1 1298 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 SUGCTQ9HAC7 445 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 RBM28Q9NW13 759 aaKnown RBP20.06■□□□□ 0.8
COL7A1-208ENST00000470076 UBIAD1Q9Y5Z9 338 aa20.06■□□□□ 0.8
COL7A1-208ENST00000470076 HTRA4P83105 476 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-208ENST00000470076 FAM26DQ5JW98 314 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 APOA5Q6Q788 366 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 CENPQQ7L2Z9 268 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-208ENST00000470076 GDPD5Q8WTR4 605 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 SEPT1Q8WYJ6 367 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 APBB2Q92870 758 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 MTUS1Q9ULD2 1270 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 PCDHA6Q9UN73 950 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 PCDHA8Q9Y5H6 950 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 BRWD1Q9NSI6 2320 aa20.05■□□□□ 0.8
COL7A1-208ENST00000470076 TAF2Q6P1X5 1199 aa20.04■□□□□ 0.8
COL7A1-208ENST00000470076 RPAINQ86UA6 219 aa20.04■□□□□ 0.8
COL7A1-208ENST00000470076 SP7Q8TDD2 431 aaPredicted RBP20.04■□□□□ 0.8
COL7A1-208ENST00000470076 HLA-CQ95604 372 aa20.04■□□□□ 0.8
COL7A1-208ENST00000470076 JADE2Q9NQC1 790 aa20.04■□□□□ 0.8
COL7A1-208ENST00000470076 ERAP1Q9NZ08 941 aa20.04■□□□□ 0.8
COL7A1-208ENST00000470076 GSTTP1A0A1W2PQM5 241 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 KCNQ1P51787 676 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 EXOSC10Q01780 885 aaKnown RBP20.03■□□□□ 0.8
COL7A1-208ENST00000470076 PPFIA1Q13136 1202 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 TSGA10IPQ3SY00 556 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 PPP1R18Q6NYC8 613 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 DHX32Q7L7V1 743 aaKnown RBP20.03■□□□□ 0.8
COL7A1-208ENST00000470076 TOP1MTQ969P6 601 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 SMARCAD1Q9H4L7 1026 aa20.03■□□□□ 0.8
COL7A1-208ENST00000470076 CNTNAP5Q8WYK1 1306 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 RBAK-RBAKDNI3L0D1 243 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 ZBTB43O43298 467 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 NAPAP54920 295 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 RTN1Q16799 776 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 WWC2Q6AWC2 1192 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 GLG1Q92896 1179 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 SAMD11Q96NU1 681 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 IFIH1Q9BYX4 1025 aaKnown RBP20.02■□□□□ 0.8
COL7A1-208ENST00000470076 OSBPL7Q9BZF2 842 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 PKD2L1Q9P0L9 805 aa20.02■□□□□ 0.8
COL7A1-208ENST00000470076 hCG_1984214I3L0E3 225 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 FOSP01100 380 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-208ENST00000470076 KRT32Q14532 448 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 GRIK4Q16099 956 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 RSPH3Q86UC2 560 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 ZNF713Q8N859 430 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-208ENST00000470076 FBXO22Q8NEZ5 403 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 YME1L1Q96TA2 773 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 MXRA8Q9BRK3 442 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 C17orf80Q9BSJ5 609 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 JPH1Q9HDC5 661 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-208ENST00000470076 RIC8AQ9NPQ8 531 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 TUBE1Q9UJT0 475 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 BRPF3Q9ULD4 1205 aa20.01■□□□□ 0.79
COL7A1-208ENST00000470076 COL4A6Q14031 1691 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20■□□□□ 0.79
COL7A1-208ENST00000470076 CDC45O75419 566 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 CHRNA1P02708 482 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 RPLP2P05387 115 aaKnown RBP20■□□□□ 0.79
COL7A1-208ENST00000470076 MARK3P27448 753 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 FUT2Q10981 343 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 TCEANC2Q96MN5 208 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 KCNH7Q9NS40 1196 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 SLC9A2Q9UBY0 812 aa20■□□□□ 0.79
COL7A1-208ENST00000470076 MBLAC1A4D2B0 266 aaPredicted RBP19.99■□□□□ 0.79
COL7A1-208ENST00000470076 UPP2O95045 317 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 HMGB1P09429 215 aaKnown RBP19.99■□□□□ 0.79
COL7A1-208ENST00000470076 RCAN1P53805 252 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 ADCK5Q3MIX3 580 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 TYW1BQ6NUM6 668 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 RUFY4Q6ZNE9 571 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 SKAP1Q86WV1 359 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 RASEFQ8IZ41 740 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 TNPO1Q92973 898 aaKnown RBP19.99■□□□□ 0.79
COL7A1-208ENST00000470076 NECAB3Q96P71 396 aaPredicted RBP19.99■□□□□ 0.79
COL7A1-208ENST00000470076 GLT8D2Q9H1C3 349 aa19.99■□□□□ 0.79
COL7A1-208ENST00000470076 V9GY48 417 aaPredicted RBP19.99■□□□□ 0.79
COL7A1-208ENST00000470076 NFASCO94856 1347 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms