RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 AMPD3Q01432 767 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 TARBP2Q15633 366 aaKnown RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 SKOR2Q2VWA4 1001 aaPredicted RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 C11orf74Q86VG3 221 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 ZC3H18Q86VM9 953 aaKnown RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 NOSTRINQ8IVI9 506 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 RBM12BQ8IXT5 1001 aaKnown RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 FBXO15Q8NCQ5 510 aaPredicted RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 ATL2Q8NHH9 583 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 CLEC4DQ8WXI8 215 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 BCAS3Q9H6U6 928 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 KCNH7Q9NS40 1196 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 THG1LQ9NWX6 298 aaKnown RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 DTLQ9NZJ0 730 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 ATP8A1Q9Y2Q0 1164 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 TEX51A0A1B0GUA7 166 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 ZEB2O60315 1214 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 SEMA7AO75326 666 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 FKBP9O95302 570 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 ZBTB48P10074 688 aaPredicted RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 NCAM1P13591 858 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 ATP2A2P16615 1042 aaKnown RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 PFKLP17858 780 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 PMLP29590 882 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 LSSP48449 732 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 KPNA1P52294 538 aaPredicted RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 IGBP1P78318 339 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 GRIN1Q05586 938 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 PAN2Q504Q3 1202 aaKnown RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 CPZQ66K79 652 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 FKBP9P1Q75LS8 142 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 STRA8Q7Z7C7 330 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 PASD1Q8IV76 773 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 SMC1BQ8NDV3 1235 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 CPA5Q8WXQ8 436 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 TOE1Q96GM8 510 aaKnown RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 SCYL1Q96KG9 808 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 GPR101Q96P66 508 aaPredicted RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 MCOLN1Q9GZU1 580 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 PCIF1Q9H4Z3 704 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 APOBEC2Q9Y235 224 aaKnown RBP5.81□□□□□ -1.48
VPS41-210ENST00000462429 TELO2Q9Y4R8 837 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 B3GALT1Q9Y5Z6 326 aa5.81□□□□□ -1.48
VPS41-210ENST00000462429 MYOCOSA0A1B0GUC4 107 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 PRAMEF25A6NGN4 478 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 FAM90A27PA6NNH2 459 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 BUB1BO60566 1050 aaPredicted RBP5.8□□□□□ -1.48
VPS41-210ENST00000462429 ASGR2P07307 311 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 HSP90B1P14625 803 aaKnown RBP5.8□□□□□ -1.48
VPS41-210ENST00000462429 FAHP16930 419 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 BPIP17213 487 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 KIF11P52732 1056 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 NKX3-2P78367 333 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 LDHDQ86WU2 507 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 DDX42Q86XP3 938 aaKnown RBP eCLIP5.8□□□□□ -1.48
VPS41-210ENST00000462429 ANKRD13AQ8IZ07 590 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 EFHBQ8N7U6 833 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 KIAA1958Q8N8K9 716 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 CHTF18Q8WVB6 975 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 DLG3Q92796 817 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 CNTD2Q9H8S5 307 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 ACSS2Q9NR19 701 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 OXSMQ9NWU1 459 aa5.8□□□□□ -1.48
VPS41-210ENST00000462429 MBD1Q9UIS9 605 aaPredicted RBP5.8□□□□□ -1.48
VPS41-210ENST00000462429 IRS2Q9Y4H2 1338 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 EYA4O95677 639 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 YBX3P16989 372 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS41-210ENST00000462429 POU3F3P20264 500 aaPredicted RBP5.79□□□□□ -1.48
VPS41-210ENST00000462429 FBLN1P23142 703 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 ADCYAP1R1P41586 468 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 HERVK_113P62684 666 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 CACNB2Q08289 660 aaPredicted RBP5.79□□□□□ -1.48
VPS41-210ENST00000462429 CC2D1AQ6P1N0 951 aaPredicted RBP5.79□□□□□ -1.48
VPS41-210ENST00000462429 WDR66Q8TBY9 1149 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 MZB1Q8WU39 189 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 FAM126AQ9BYI3 521 aaPredicted RBP5.79□□□□□ -1.48
VPS41-210ENST00000462429 PCDH18Q9HCL0 1135 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 HSPBP1Q9NZL4 362 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 FAN1Q9Y2M0 1017 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 PCDHA5Q9Y5H7 936 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 SPO11Q9Y5K1 396 aa5.79□□□□□ -1.48
VPS41-210ENST00000462429 ACOT7O00154 380 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 NEMP1O14524 444 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 N4BP3O15049 544 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 FOXP2O15409 715 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 LRG1P02750 347 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 C4BPAP04003 597 aaKnown RBP5.78□□□□□ -1.48
VPS41-210ENST00000462429 CYP17A1P05093 508 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 CDK11BP21127 795 aaKnown RBP5.78□□□□□ -1.48
VPS41-210ENST00000462429 SDHAP31040 664 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 STAT5AP42229 794 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 CDR1P51861 262 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 NCKAP1LP55160 1127 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 STAT4Q14765 748 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 TMEM132BQ14DG7 1078 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 ATP13A4Q4VNC1 1196 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 RNF219Q5W0B1 726 aaPredicted RBP5.78□□□□□ -1.48
VPS41-210ENST00000462429 CREB3L3Q68CJ9 461 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 FSTL4Q6MZW2 842 aa5.78□□□□□ -1.48
VPS41-210ENST00000462429 TEPPQ6URK8 271 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms