RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CYFIP1Q7L576 1253 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 RETREG2Q8NC44 543 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 CCDC148Q8NFR7 591 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 CRYGNQ8WXF5 182 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 C16orf70Q9BSU1 422 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 FTOQ9C0B1 505 aaKnown RBP eCLIP21.14■□□□□ 0.97
HOXD3-204ENST00000459979 TPCN1Q9ULQ1 816 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 NOD1Q9Y239 953 aa21.14■□□□□ 0.97
HOXD3-204ENST00000459979 COL4A4P53420 1690 aaPredicted RBP21.13■□□□□ 0.97
HOXD3-204ENST00000459979 REV3LO60673 3130 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 EPOPA6NHQ4 379 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 ATP9AO75110 1047 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 DEXIO95424 95 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 ACTN1P12814 892 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 KCNA2P16389 499 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 PSEN2P49810 448 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 AK2P54819 239 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 SSRP1Q08945 709 aaKnown RBP21.13■□□□□ 0.97
HOXD3-204ENST00000459979 MTMR1Q13613 665 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 BICD2Q8TD16 824 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 GPR20Q99678 358 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 MXRA8Q9BRK3 442 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 TMEM260Q9NX78 707 aa21.13■□□□□ 0.97
HOXD3-204ENST00000459979 MEIS1O00470 390 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 PITPNM1O00562 1244 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 NOP56O00567 594 aaKnown RBP21.12■□□□□ 0.97
HOXD3-204ENST00000459979 CYP3A4P08684 503 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 RFC2P35250 354 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 TFF2Q03403 129 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 SCRN1Q12765 414 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 MFSD10Q14728 455 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 PTGISQ16647 500 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 CEP55Q53EZ4 464 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 KRT40Q6A162 431 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 NIPA1Q7RTP0 329 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 REXO1Q8N1G1 1221 aaKnown RBP21.12■□□□□ 0.97
HOXD3-204ENST00000459979 NECAB3Q96P71 396 aaPredicted RBP21.12■□□□□ 0.97
HOXD3-204ENST00000459979 SLC9A7Q96T83 725 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 UHRF1Q96T88 793 aaPredicted RBP21.12■□□□□ 0.97
HOXD3-204ENST00000459979 SLKQ9H2G2 1235 aaPredicted RBP21.12■□□□□ 0.97
HOXD3-204ENST00000459979 GTF2IRD1Q9UHL9 959 aa21.12■□□□□ 0.97
HOXD3-204ENST00000459979 PPFIA3O75145 1194 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 CDKL5O76039 1030 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 ZNF286BP0CG31 522 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 ARHGAP4P98171 946 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 STK3Q13188 491 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 BFSP2Q13515 415 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 KIAA0753Q2KHM9 967 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 JAKMIP3Q5VZ66 844 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 GDF6Q6KF10 455 aaPredicted RBP21.11■□□□□ 0.97
HOXD3-204ENST00000459979 SPRED2Q7Z698 418 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 IL27Q8NEV9 243 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 PGBD1Q96JS3 809 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 CTAGE1Q96RT6 745 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 KCNH7Q9NS40 1196 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 MUC3AQ02505 3323 aa21.11■□□□□ 0.97
HOXD3-204ENST00000459979 H3BRB1 525 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 ADAMTS3O15072 1205 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 SORBS3O60504 671 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 LGALS2P05162 132 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 NEK4P51957 841 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 SKIV2LQ15477 1246 aaKnown RBP21.1■□□□□ 0.97
HOXD3-204ENST00000459979 TMCO2Q7Z6W1 182 aaPredicted RBP21.1■□□□□ 0.97
HOXD3-204ENST00000459979 HERC6Q8IVU3 1022 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 C7orf31Q8N865 590 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 CYP2W1Q8TAV3 490 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 TUT1Q9H6E5 874 aaKnown RBP21.1■□□□□ 0.97
HOXD3-204ENST00000459979 VPS54Q9P1Q0 977 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 HDAC6Q9UBN7 1215 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 RAPGEFL1Q9UHV5 662 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 MTCH2Q9Y6C9 303 aa21.1■□□□□ 0.97
HOXD3-204ENST00000459979 STK36Q9NRP7 1315 aa21.09■□□□□ 0.97
HOXD3-204ENST00000459979 TAP1Q03518 808 aa21.09■□□□□ 0.97
HOXD3-204ENST00000459979 ARNTL2Q8WYA1 636 aa21.09■□□□□ 0.97
HOXD3-204ENST00000459979 DHX38Q92620 1227 aaKnown RBP21.09■□□□□ 0.97
HOXD3-204ENST00000459979 TSPYL2Q9H2G4 693 aaPredicted RBP21.09■□□□□ 0.97
HOXD3-204ENST00000459979 NFASCO94856 1347 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 COL9A1P20849 921 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 HOXC8P31273 242 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 KCNQ1P51787 676 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 RBL2Q08999 1139 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 GPNMBQ14956 572 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 GALNT17Q6IS24 598 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 SEPT1Q8WYJ6 367 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 ALG1Q9BT22 464 aa21.08■□□□□ 0.97
HOXD3-204ENST00000459979 GSTTP1A0A1W2PQM5 241 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 ARP10275 920 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 CIITAP33076 1130 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 ME3Q16798 604 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 DAGLBQ8NCG7 672 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 CAGE1Q8TC20 777 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 PHOSPHO2Q8TCD6 241 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 AGO4Q9HCK5 861 aaKnown RBP21.07■□□□□ 0.96
HOXD3-204ENST00000459979 PCDHA4Q9UN74 947 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 TELO2Q9Y4R8 837 aa21.07■□□□□ 0.96
HOXD3-204ENST00000459979 IGLV3-22A0A075B6J6 115 aa21.06■□□□□ 0.96
HOXD3-204ENST00000459979 LCHNA4D1U4 455 aa21.06■□□□□ 0.96
HOXD3-204ENST00000459979 FAM86B1E9PN63 330 aa21.06■□□□□ 0.96
HOXD3-204ENST00000459979 GTPBP6O43824 516 aaPredicted RBP21.06■□□□□ 0.96
HOXD3-204ENST00000459979 CTDNEP1O95476 244 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms