RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 SUPT20HL2P0C7V6 817 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 XBP1P17861 261 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 CIITAP33076 1130 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 FXR1P51114 621 aaKnown RBP eCLIP16.86■□□□□ 0.29
HDAC4-204ENST00000446876 SHHQ15465 462 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 INF2Q27J81 1249 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 GALNT17Q6IS24 598 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 FAM177A1Q8N128 213 aaPredicted RBP16.86■□□□□ 0.29
HDAC4-204ENST00000446876 SEPT1Q8WYJ6 367 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 WASF1Q92558 559 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 SCLYQ96I15 445 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 BACH2Q9BYV9 841 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 WDR81Q562E7 1941 aa16.86■□□□□ 0.29
HDAC4-204ENST00000446876 FAM205CA6NFA0 338 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 IPO5O00410 1097 aaKnown RBP16.85■□□□□ 0.29
HDAC4-204ENST00000446876 TDP2O95551 362 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 CCNE2O96020 404 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 SMIM10L2AP0DMW4 78 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 SMIM10L2BP0DMW5 78 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 ACRP10323 421 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 MARK3P27448 753 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 ACTR2P61160 394 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 SETQ01105 290 aaPredicted RBP16.85■□□□□ 0.29
HDAC4-204ENST00000446876 NONOQ15233 471 aaKnown RBP eCLIP16.85■□□□□ 0.29
HDAC4-204ENST00000446876 EARS2Q5JPH6 523 aaKnown RBP16.85■□□□□ 0.29
HDAC4-204ENST00000446876 KRT25Q7Z3Z0 450 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 DHX38Q92620 1227 aaKnown RBP16.85■□□□□ 0.29
HDAC4-204ENST00000446876 WNT8BQ93098 351 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 GJA10Q969M2 543 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 ZSCAN31Q96LW9 406 aaPredicted RBP16.85■□□□□ 0.29
HDAC4-204ENST00000446876 PCYT2Q99447 389 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 ZNF577Q9BSK1 485 aa16.85■□□□□ 0.29
HDAC4-204ENST00000446876 CCDC194A0A1B0GVG4 234 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 DHX15O43143 795 aaKnown RBP16.84■□□□□ 0.29
HDAC4-204ENST00000446876 ST18O60284 1047 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 NR5A1Q13285 461 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 PIK3AP1Q6ZUJ8 805 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 C16orf59Q7L2K0 433 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 TMEM199Q8N511 208 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 GLG1Q92896 1179 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 RNPEPQ9H4A4 650 aa16.84■□□□□ 0.29
HDAC4-204ENST00000446876 SH2B1Q9NRF2 756 aaPredicted RBP16.84■□□□□ 0.29
HDAC4-204ENST00000446876 ZNF215Q9UL58 517 aaPredicted RBP16.84■□□□□ 0.29
HDAC4-204ENST00000446876 C17orf102A2RUQ5 167 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 MSH4O15457 936 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 KRT2P35908 639 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 USP11P51784 963 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 GUCY1B3Q02153 619 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 PPIGQ13427 754 aaKnown RBP eCLIP16.83■□□□□ 0.287e-9■■□□□ 13.7
HDAC4-204ENST00000446876 KRT40Q6A162 431 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 LRCH3Q96II8 777 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.83■□□□□ 0.283e-8■■□□□ 11.5
HDAC4-204ENST00000446876 SETD4Q9NVD3 440 aa16.83■□□□□ 0.28
HDAC4-204ENST00000446876 MYH9P35579 1960 aaKnown RBP16.82■□□□□ 0.28
HDAC4-204ENST00000446876 EMSYQ7Z589 1322 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 TREHO43280 583 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 LGR5O75473 907 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 MMP1P03956 469 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 LETM2Q2VYF4 491 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 TNFRSF25Q93038 417 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 ATP6V0A1Q93050 837 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 VWCEQ96DN2 955 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 LLPHQ9BRT6 129 aaKnown RBP16.82■□□□□ 0.28
HDAC4-204ENST00000446876 IL23AQ9NPF7 189 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 TET1Q8NFU7 2136 aa16.82■□□□□ 0.28
HDAC4-204ENST00000446876 BTBD18B2RXH4 712 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 SLC37A4O43826 429 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 HOXC8P31273 242 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 PTK7Q13308 1070 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 BFSP2Q13515 415 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 TRIM29Q14134 588 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 TRIM71Q2Q1W2 868 aaKnown RBP16.81■□□□□ 0.28
HDAC4-204ENST00000446876 TMEM240Q5SV17 173 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 ABHD15Q6UXT9 468 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 ZNF365Q70YC5 407 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 DEFB128Q7Z7B8 93 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 CCDC60Q8IWA6 550 aaPredicted RBP16.81■□□□□ 0.28
HDAC4-204ENST00000446876 DIS3L2Q8IYB7 885 aaKnown RBP16.81■□□□□ 0.28
HDAC4-204ENST00000446876 LMBR1Q8WVP7 490 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 RNPC3Q96LT9 517 aaKnown RBP16.81■□□□□ 0.28
HDAC4-204ENST00000446876 SMARCAD1Q9H4L7 1026 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 BRMS1Q9HCU9 246 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 ERAP1Q9NZ08 941 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 LAMA3Q16787 3333 aa16.81■□□□□ 0.28
HDAC4-204ENST00000446876 CYP3A7-CYP3A51PA0A087WV96 503 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 PITPNM1O00562 1244 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 BACH1O14867 736 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 ATG7O95352 703 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 IQCF3P0C7M6 154 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 CYP3A7P24462 503 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 PPFIA1Q13136 1202 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 LRIT3Q3SXY7 679 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 Q4G0T1 1027 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 NEK8Q86SG6 692 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 SERINC5Q86VE9 423 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 CCDC155Q8N6L0 562 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 RETREG2Q8NC44 543 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 CAGE1Q8TC20 777 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 SLC5A5Q92911 643 aa16.8■□□□□ 0.28
HDAC4-204ENST00000446876 ZBTB10Q96DT7 871 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms