RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 EPHB4P54760 987 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 SMAD3P84022 425 aaKnown RBP11.89□□□□□ -0.51
MCF2L-216ENST00000439475 ME3Q16798 604 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 DAGLBQ8NCG7 672 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 RASGRP4Q8TDF6 673 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 SCLYQ96I15 445 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 LRCH3Q96II8 777 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 ZNF577Q9BSK1 485 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 FTOQ9C0B1 505 aaKnown RBP eCLIP11.89□□□□□ -0.51
MCF2L-216ENST00000439475 BRMS1Q9HCU9 246 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 LIMCH1Q9UPQ0 1083 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 DOCK5Q9H7D0 1870 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 UMODL1Q5DID0 1318 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 NRCAMQ92823 1304 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 CCDC194A0A1B0GVG4 234 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 RRN3P2A6NIE6 340 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 FAM86B1E9PN63 330 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 IPO5O00410 1097 aaKnown RBP11.88□□□□□ -0.51
MCF2L-216ENST00000439475 SOX1O00570 391 aaPredicted RBP11.88□□□□□ -0.51
MCF2L-216ENST00000439475 FAM86B2P0C5J1 330 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 SELPP16109 830 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 SLC26A2P50443 739 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 STAT5BP51692 787 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 ACTR2P61160 394 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 TRIM29Q14134 588 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 NONOQ15233 471 aaKnown RBP eCLIP11.88□□□□□ -0.51
MCF2L-216ENST00000439475 PRR16Q569H4 304 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 FAM160B1Q5W0V3 765 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 MIS18BP1Q6P0N0 1132 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 LRRC8DQ7L1W4 858 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 PLPPR4Q7Z2D5 763 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 KRT25Q7Z3Z0 450 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 DEFB128Q7Z7B8 93 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 NECAB1Q8N987 351 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 TBCKQ8TEA7 893 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 CRYGNQ8WXF5 182 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 HERVK_113Q902F9 699 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 GTF3C6Q969F1 213 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 NAP1L4Q99733 375 aaKnown RBP11.88□□□□□ -0.51
MCF2L-216ENST00000439475 WNT8AQ9H1J5 351 aa11.88□□□□□ -0.51
MCF2L-216ENST00000439475 TRIOBPQ9H2D6 2365 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 EMSYQ7Z589 1322 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 DDX39AO00148 427 aaKnown RBP11.87□□□□□ -0.51
MCF2L-216ENST00000439475 BACH1O14867 736 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 CAND2O75155 1236 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 LGR5O75473 907 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 RPLP2P05387 115 aaKnown RBP11.87□□□□□ -0.51
MCF2L-216ENST00000439475 CKBP12277 381 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 RBM25P49756 843 aaKnown RBP11.87□□□□□ -0.51
MCF2L-216ENST00000439475 KRT76Q01546 638 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 RBL2Q08999 1139 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 ZNF697Q5TEC3 545 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 FAM109BQ6ICB4 259 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-216ENST00000439475 C16orf59Q7L2K0 433 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 OTOP2Q7RTS6 562 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 RSPH3Q86UC2 560 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 PHF20Q9BVI0 1012 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 SH2B1Q9NRF2 756 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-216ENST00000439475 SETD4Q9NVD3 440 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 KCNJ14Q9UNX9 436 aa11.87□□□□□ -0.51
MCF2L-216ENST00000439475 IGLV3-22A0A075B6J6 115 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 ZBBXA8MT70 800 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 TREHO43280 583 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 ST18O60284 1047 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 ATG7O95352 703 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 MARK3P27448 753 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 THPOP40225 353 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 ZNF200P98182 395 aaPredicted RBP11.86□□□□□ -0.51
MCF2L-216ENST00000439475 PPFIA1Q13136 1202 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 RABEP1Q15276 862 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 ZNF746Q6NUN9 644 aaPredicted RBP11.86□□□□□ -0.51
MCF2L-216ENST00000439475 TAF2Q6P1X5 1199 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 MOXD1Q6UVY6 613 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 SERINC5Q86VE9 423 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 TRIM50Q86XT4 487 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 SMAP1Q8IYB5 467 aaPredicted RBP11.86□□□□□ -0.51
MCF2L-216ENST00000439475 AIFM3Q96NN9 605 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 LLPHQ9BRT6 129 aaKnown RBP11.86□□□□□ -0.51
MCF2L-216ENST00000439475 SAMM50Q9Y512 469 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 SLC4A7Q9Y6M7 1214 aa11.86□□□□□ -0.51
MCF2L-216ENST00000439475 TMEM265A0A087WTH1 108 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 RSPH10B2B2RC85 870 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 M0R2N6 131 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 MARCH6O60337 910 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 HBP1O60381 514 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 EFCAB14O75071 495 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 CTDNEP1O95476 244 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 PSAPP07602 524 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 RSPH10BP0C881 870 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 HOXC8P31273 242 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 KRT2P35908 639 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 ITGB3BPQ13352 177 aaPredicted RBP11.85□□□□□ -0.51
MCF2L-216ENST00000439475 SAFBQ15424 915 aaKnown RBP eCLIP11.85□□□□□ -0.51
MCF2L-216ENST00000439475 Q4G0T1 1027 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 ZNF618Q5T7W0 954 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 RASIP1Q5U651 963 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 ABHD15Q6UXT9 468 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 CKAP2LQ8IYA6 745 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 DEFB123Q8N688 67 aa11.85□□□□□ -0.51
MCF2L-216ENST00000439475 FAM184AQ8NB25 1140 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms