RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NOX5Q96PH1 765 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 VPS33BQ9H267 617 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 RASSF4Q9H2L5 321 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 TSKSQ9UJT2 592 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 PNMA6FA0A0J9YX94 578 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 NCK2O43639 380 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 PPFIA4O75335 1185 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 NOL4O94818 638 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 UBE2SQ16763 222 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 FAM26FQ5R3K3 315 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 GPIHBP1Q8IV16 184 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 FAM76AQ8TAV0 307 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 SH3GL2Q99962 352 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 TANGO6Q9C0B7 1094 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 TAOK3Q9H2K8 898 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 JMJD4Q9H9V9 463 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 STIM2Q9P246 746 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 DDX25Q9UHL0 483 aaKnown RBP18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 ATAD5Q96QE3 1844 aa18.08■□□□□ 0.49
CLCNKA-203ENST00000439316 TRIM66O15016 1216 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 TLR2O60603 784 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 PPP1R11O60927 126 aaPredicted RBP18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 SERPING1P05155 500 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 AKR1B1P15121 316 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 PAFAH1B1P43034 410 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 EPHB4P54760 987 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 RASSF7Q02833 373 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 ZNF543Q08ER8 600 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 EMBQ6PCB8 327 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 NIM1KQ8IY84 436 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 GPCPD1Q9NPB8 672 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 SMARCAL1Q9NZC9 954 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 EHD2Q9NZN4 543 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 SERPINA10Q9UK55 444 aa18.08■□□□□ 0.48
CLCNKA-203ENST00000439316 MYH7BA7E2Y1 1941 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 ARFGEF1Q9Y6D6 1849 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 KDM3AQ9Y4C1 1321 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 GCFC2P16383 781 aaKnown RBP18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 CXCR5P32302 372 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 MARSP56192 900 aaKnown RBP18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 NFIAQ12857 509 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 SLC9C1Q4G0N8 1177 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 CCDC40Q4G0X9 1142 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 TDRD12Q587J7 1177 aaKnown RBP18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 SFMBT2Q5VUG0 894 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 RSBN1LQ6PCB5 846 aaPredicted RBP18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 ANKRD13CQ8N6S4 541 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 NLGN2Q8NFZ4 835 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 CAVIN3Q969G5 261 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 PSMB7Q99436 277 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 PANK4Q9NVE7 773 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 ZNRF3Q9ULT6 936 aa18.07■□□□□ 0.48
CLCNKA-203ENST00000439316 GOLGA6CA6NDK9 693 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 NFKBIEO00221 500 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 TRAF5O00463 557 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 VIL1P09327 827 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 GOLGA6DP0CG33 693 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 ERCC3P19447 782 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 CACNB3P54284 484 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 SLC7A5Q01650 507 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 GLE1Q53GS7 698 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 FAM83BQ5T0W9 1011 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 C10orf67Q8IYJ2 551 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 ADGRF4Q8IZF3 695 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 CUL5Q93034 780 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 LSM14BQ9BX40 385 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 NLRC4Q9NPP4 1024 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 GOLGA6AQ9NYA3 693 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 RNF14Q9UBS8 474 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 PCDHA2Q9Y5H9 948 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 GOLGA8KD6RF30 607 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 GNA14O95837 355 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 MATR3P43243 847 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 C8orf74Q6P047 294 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 CLEC10AQ8IUN9 316 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 TRIM59Q8IWR1 403 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 ZC3H3Q8IXZ2 948 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 HINFPQ9BQA5 517 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 FGFBP2Q9BYJ0 223 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 NT5C3AQ9H0P0 336 aa18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 RBM12Q9NTZ6 932 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-203ENST00000439316 MYO3BQ8WXR4 1341 aa18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 BUB1O43683 1085 aa18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 TTLL1O95922 423 aa18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 EIF6P56537 245 aaKnown RBP18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 NNTQ13423 1086 aa18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 RSPH14Q9UHP6 348 aa18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 ZBTB12Q9Y330 459 aaPredicted RBP18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 GREB1LQ9C091 1923 aaPredicted RBP18.05■□□□□ 0.48
CLCNKA-203ENST00000439316 SLC26A4O43511 780 aa18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 EPB41P11171 864 aaKnown RBP18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 MRPS25P82663 173 aaKnown RBP18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 NAB2Q15742 525 aa18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 CFAP221Q4G0U5 840 aa18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 ALS2CLQ60I27 953 aa18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 TSEN2Q8NCE0 465 aaKnown RBP18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 LUC7LQ9NQ29 371 aaKnown RBP18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 BMP2KQ9NSY1 1161 aaPredicted RBP18.04■□□□□ 0.48
CLCNKA-203ENST00000439316 OPA1O60313 960 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms