RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TIMP1P01033 207 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 CIITAP33076 1130 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 MCM2P49736 904 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 HMGN5P82970 282 aaKnown RBP13.01□□□□□ -0.33
COL28A1-203ENST00000435823 ST3GAL1Q11201 340 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 NPY5RQ15761 445 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 UTP14CQ5TAP6 766 aaKnown RBP13.01□□□□□ -0.33
COL28A1-203ENST00000435823 SESTD1Q86VW0 696 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 TBCKQ8TEA7 893 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 ZNF577Q9BSK1 485 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 C16orf70Q9BSU1 422 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 HIPK3Q9H422 1215 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 TRMT13Q9NUP7 481 aaKnown RBP13.01□□□□□ -0.33
COL28A1-203ENST00000435823 SLC9A2Q9UBY0 812 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 TCEAL9Q9UHQ7 104 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 IGLV3-22A0A075B6J6 115 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 A0A1W2PPC1 479 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 H3BRB1 525 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 HAS3O00219 553 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 KRT2P35908 639 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 TCF7P36402 384 aaPredicted RBP13□□□□□ -0.33
COL28A1-203ENST00000435823 ITGB3BPQ13352 177 aaPredicted RBP13□□□□□ -0.33
COL28A1-203ENST00000435823 PRR16Q569H4 304 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 TMEM199Q8N511 208 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 FAM184AQ8NB25 1140 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 PPP1R13LQ8WUF5 828 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 PPP1R12CQ9BZL4 782 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 PRO3102Q9H379 93 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 TUT1Q9H6E5 874 aaKnown RBP13□□□□□ -0.33
COL28A1-203ENST00000435823 GJB4Q9NTQ9 266 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 HDAC6Q9UBN7 1215 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 GTF2IRD1Q9UHL9 959 aa13□□□□□ -0.33
COL28A1-203ENST00000435823 GSTTP1A0A1W2PQM5 241 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 IPO5O00410 1097 aaKnown RBP12.99□□□□□ -0.33
COL28A1-203ENST00000435823 CYP2C9P11712 490 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 ITGB8P26012 769 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 FOSBP53539 338 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 FPGSQ05932 587 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 PTGISQ16647 500 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 HABP4Q5JVS0 413 aaKnown RBP12.99□□□□□ -0.33
COL28A1-203ENST00000435823 MFSD5Q6N075 450 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 CCDC155Q8N6L0 562 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 GLG1Q92896 1179 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 NAP1L4Q99733 375 aaKnown RBP12.99□□□□□ -0.33
COL28A1-203ENST00000435823 NOC4LQ9BVI4 516 aaKnown RBP12.99□□□□□ -0.33
COL28A1-203ENST00000435823 AZI2Q9H6S1 392 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 TBC1D22BQ9NU19 505 aa12.99□□□□□ -0.33
COL28A1-203ENST00000435823 C17orf102A2RUQ5 167 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 DDX39AO00148 427 aaKnown RBP12.98□□□□□ -0.33
COL28A1-203ENST00000435823 MMP1P03956 469 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 ACTR2P61160 394 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 PPIGQ13427 754 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL28A1-203ENST00000435823 BFSP2Q13515 415 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 SAFBQ15424 915 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL28A1-203ENST00000435823 INF2Q27J81 1249 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 KRT40Q6A162 431 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 GDF6Q6KF10 455 aaPredicted RBP12.98□□□□□ -0.33
COL28A1-203ENST00000435823 MOXD1Q6UVY6 613 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 PIK3AP1Q6ZUJ8 805 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 NEK8Q86SG6 692 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 TRIM50Q86XT4 487 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 TDHQ8IZJ6 230 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 RETREG2Q8NC44 543 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 OXER1Q8TDS5 423 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 C8orf76Q96K31 380 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 SMARCAD1Q9H4L7 1026 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 ERAP1Q9NZ08 941 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 TELO2Q9Y4R8 837 aa12.98□□□□□ -0.33
COL28A1-203ENST00000435823 EMSYQ7Z589 1322 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 SMIM10L2AP0DMW4 78 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 SMIM10L2BP0DMW5 78 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 GNAT1P11488 350 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 CYP2C18P33260 490 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 KRT76Q01546 638 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 LETM2Q2VYF4 491 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 Q4G0T1 1027 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 MIS18BP1Q6P0N0 1132 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 DIS3L2Q8IYB7 885 aaKnown RBP12.97□□□□□ -0.33
COL28A1-203ENST00000435823 CAGE1Q8TC20 777 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 TNPO1Q92973 898 aaKnown RBP12.97□□□□□ -0.33
COL28A1-203ENST00000435823 LENG9Q96B70 501 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 TMX3Q96JJ7 454 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 KIF3AQ9Y496 699 aa12.97□□□□□ -0.33
COL28A1-203ENST00000435823 UMODL1Q5DID0 1318 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 CYP3A7-CYP3A51PA0A087WV96 503 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 BACH1O14867 736 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 MSH4O15457 936 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 DHX15O43143 795 aaKnown RBP12.96□□□□□ -0.33
COL28A1-203ENST00000435823 LGR5O75473 907 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 TDP2O95551 362 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 GCFC2P16383 781 aaKnown RBP12.96□□□□□ -0.33
COL28A1-203ENST00000435823 CYP3A7P24462 503 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 MARK3P27448 753 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 STAT5BP51692 787 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 CCL23P55773 120 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 NR5A1Q13285 461 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 PTK7Q13308 1070 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 FAM160B1Q5W0V3 765 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 ZNF746Q6NUN9 644 aaPredicted RBP12.96□□□□□ -0.33
COL28A1-203ENST00000435823 SMAP1Q8IYB5 467 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms