RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CALM3P0DP25 149 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 HOXC8P31273 242 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 TCF7P36402 384 aaPredicted RBP16.67■□□□□ 0.26
SDC1-204ENST00000429035 COL9A3Q14050 684 aaPredicted RBP16.67■□□□□ 0.26
SDC1-204ENST00000429035 CREB3L3Q68CJ9 461 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 LMBR1Q8WVP7 490 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 OSBPL7Q9BZF2 842 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 PSTPIP2Q9H939 334 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 LOXHD1Q8IVV2 1947 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 PIK3CDO00329 1044 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 CAND2O75155 1236 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 PPFIA1Q13136 1202 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 XRRA1Q6P2D8 792 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 TMTC2Q8N394 836 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 GIMAP8Q8ND71 665 aaPredicted RBP16.66■□□□□ 0.26
SDC1-204ENST00000429035 RAPGEFL1Q9UHV5 662 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 XIRP2A4UGR9 3374 aa16.66■□□□□ 0.26
SDC1-204ENST00000429035 GHRP10912 638 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 SMARCA1P28370 1054 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 IGBP1P78318 339 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 MTMR1Q13613 665 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 SYNE3Q6ZMZ3 975 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 TMTC3Q6ZXV5 915 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 GLG1Q92896 1179 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 GPRASP2Q96D09 838 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 CDHR1Q96JP9 859 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 SENP7Q9BQF6 1050 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 MTA3Q9BTC8 594 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 IFIH1Q9BYX4 1025 aaKnown RBP16.65■□□□□ 0.26
SDC1-204ENST00000429035 EHMT1Q9H9B1 1298 aa16.65■□□□□ 0.26
SDC1-204ENST00000429035 ATG2AQ2TAZ0 1938 aa16.64■□□□□ 0.26
SDC1-204ENST00000429035 ATP9AO75110 1047 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 KCNA2P16389 499 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 LIFRP42702 1097 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 RUFY4Q6ZNE9 571 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 SKAP1Q86WV1 359 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 PGBD1Q96JS3 809 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 TCEANC2Q96MN5 208 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 LMCD1Q9NZU5 365 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 NAP1L2Q9ULW6 460 aaPredicted RBP16.64■□□□□ 0.25
SDC1-204ENST00000429035 PCDHA6Q9UN73 950 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 PCDHA8Q9Y5H6 950 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 CNTNAP5Q8WYK1 1306 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 NRCAMQ92823 1304 aa16.64■□□□□ 0.25
SDC1-204ENST00000429035 CSPG5O95196 566 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 ITGB5P18084 799 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 NAPAP54920 295 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 HTRA4P83105 476 aaPredicted RBP16.63■□□□□ 0.25
SDC1-204ENST00000429035 MKRN4PQ13434 485 aaPredicted RBP16.63■□□□□ 0.25
SDC1-204ENST00000429035 GRIK4Q16099 956 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 EP400NLQ6ZTU2 488 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 RSPH3Q86UC2 560 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 SEPT1Q8WYJ6 367 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 APBB2Q92870 758 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 UBE2ZQ9H832 354 aaPredicted RBP16.63■□□□□ 0.25
SDC1-204ENST00000429035 TUBE1Q9UJT0 475 aa16.63■□□□□ 0.25
SDC1-204ENST00000429035 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.62■□□□□ 0.25
SDC1-204ENST00000429035 KCNA5P22460 613 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 PTPROQ16827 1216 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 EPC2Q52LR7 807 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 RNF20Q5VTR2 975 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 WWC2Q6AWC2 1192 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 TAF2Q6P1X5 1199 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 FANCBQ8NB91 859 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 SP7Q8TDD2 431 aaPredicted RBP16.62■□□□□ 0.25
SDC1-204ENST00000429035 SAMD11Q96NU1 681 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 FAM49AQ9H0Q0 323 aaPredicted RBP16.62■□□□□ 0.25
SDC1-204ENST00000429035 JPH1Q9HDC5 661 aaPredicted RBP16.62■□□□□ 0.25
SDC1-204ENST00000429035 ERAP1Q9NZ08 941 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 TRPC6Q9Y210 931 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 UBIAD1Q9Y5Z9 338 aa16.62■□□□□ 0.25
SDC1-204ENST00000429035 KIAA1671Q9BY89 1806 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 GSTTP1A0A1W2PQM5 241 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 CTNNB1P35222 781 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 ADAM17P78536 824 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 GPM6BQ13491 265 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 NECTIN1Q15223 517 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 RTN1Q16799 776 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 TIGD5Q53EQ6 642 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 DNAJB3Q8WWF6 145 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 TOP1MTQ969P6 601 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 ZBTB10Q96DT7 871 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 SMARCAD1Q9H4L7 1026 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 JADE2Q9NQC1 790 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 RBM28Q9NW13 759 aaKnown RBP16.61■□□□□ 0.25
SDC1-204ENST00000429035 CDY2AQ9Y6F7 541 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 COL4A6Q14031 1691 aa16.61■□□□□ 0.25
SDC1-204ENST00000429035 MYO7AQ13402 2215 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 GOLGA8AA7E2F4 631 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 GOLGA8BA8MQT2 603 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 CHRNA1P02708 482 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 IBSPP21815 317 aaPredicted RBP16.6■□□□□ 0.25
SDC1-204ENST00000429035 ADCY7P51828 1080 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 FAM26DQ5JW98 314 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 APOA5Q6Q788 366 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 TMEM192Q8IY95 271 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 MRPL38Q96DV4 380 aaKnown RBP16.6■□□□□ 0.25
SDC1-204ENST00000429035 NEK1Q96PY6 1258 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 SDF4Q9BRK5 362 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 AZI2Q9H6S1 392 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms