RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 SDF4Q9BRK5 362 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 AGO4Q9HCK5 861 aaKnown RBP16.88■□□□□ 0.29
LIMS4-201ENST00000413601 JPH1Q9HDC5 661 aaPredicted RBP16.88■□□□□ 0.29
LIMS4-201ENST00000413601 SLC9A2Q9UBY0 812 aa16.88■□□□□ 0.29
LIMS4-201ENST00000413601 ZNF215Q9UL58 517 aaPredicted RBP16.88■□□□□ 0.29
LIMS4-201ENST00000413601 IGLV3-22A0A075B6J6 115 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 CTDNEP1O95476 244 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 IQCF3P0C7M6 154 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 ITGB3BPQ13352 177 aaPredicted RBP16.87■□□□□ 0.29
LIMS4-201ENST00000413601 ME3Q16798 604 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 Q7L0L9 218 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 NIPA1Q7RTP0 329 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 OTOP2Q7RTS6 562 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 CCDC155Q8N6L0 562 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 CAGE1Q8TC20 777 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 UIMC1Q96RL1 719 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 RNPEPQ9H4A4 650 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 PCDHA4Q9UN74 947 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 NFASCO94856 1347 aa16.87■□□□□ 0.29
LIMS4-201ENST00000413601 C17orf102A2RUQ5 167 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 PTK7Q13308 1070 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 RASIP1Q5U651 963 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 BLIDQ8IZY5 108 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 DEFB123Q8N688 67 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 AFAP1L1Q8TED9 768 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 HERVK_113Q902F9 699 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 ATP6V0A1Q93050 837 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 WNT8BQ93098 351 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 SETD4Q9NVD3 440 aa16.86■□□□□ 0.29
LIMS4-201ENST00000413601 DDX39AO00148 427 aaKnown RBP16.85■□□□□ 0.29
LIMS4-201ENST00000413601 CKBP12277 381 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 HOXC8P31273 242 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 RFC2P35250 354 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 ACTR2P61160 394 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 SMAD3P84022 425 aaKnown RBP16.85■□□□□ 0.29
LIMS4-201ENST00000413601 NPY5RQ15761 445 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 FAM109BQ6ICB4 259 aaPredicted RBP16.85■□□□□ 0.29
LIMS4-201ENST00000413601 SERINC5Q86VE9 423 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 GLG1Q92896 1179 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 GTF3C6Q969F1 213 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 CXXC1Q9P0U4 656 aaPredicted RBP16.85■□□□□ 0.29
LIMS4-201ENST00000413601 KCNJ14Q9UNX9 436 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 PTPRSQ13332 1948 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 LOXHD1Q8IVV2 1947 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 STK36Q9NRP7 1315 aa16.85■□□□□ 0.29
LIMS4-201ENST00000413601 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.84■□□□□ 0.29
LIMS4-201ENST00000413601 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.84■□□□□ 0.29
LIMS4-201ENST00000413601 GRXCR1A8MXD5 290 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 IPO5O00410 1097 aaKnown RBP16.84■□□□□ 0.29
LIMS4-201ENST00000413601 TREHO43280 583 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 EDIL3O43854 480 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 SELPP16109 830 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 MARK3P27448 753 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 RBL2Q08999 1139 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 TRIM71Q2Q1W2 868 aaKnown RBP16.84■□□□□ 0.29
LIMS4-201ENST00000413601 PRR16Q569H4 304 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 LRRC8DQ7L1W4 858 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 FAM177A1Q8N128 213 aaPredicted RBP16.84■□□□□ 0.29
LIMS4-201ENST00000413601 DAGLBQ8NCG7 672 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 PCYT2Q99447 389 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 ZNF577Q9BSK1 485 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 SMARCAD1Q9H4L7 1026 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 GJB4Q9NTQ9 266 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 ERAP1Q9NZ08 941 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 ORC3Q9UBD5 711 aaPredicted RBP16.84■□□□□ 0.29
LIMS4-201ENST00000413601 SIP14410 1827 aa16.84■□□□□ 0.29
LIMS4-201ENST00000413601 RBAK-RBAKDNI3L0D1 243 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 M0R2N6 131 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 DHX15O43143 795 aaKnown RBP16.83■□□□□ 0.28
LIMS4-201ENST00000413601 LGR5O75473 907 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 CCNE2O96020 404 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 PFKMP08237 780 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 GNAT1P11488 350 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 CIITAP33076 1130 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 SETQ01105 290 aaPredicted RBP16.83■□□□□ 0.28
LIMS4-201ENST00000413601 GPNMBQ14956 572 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 ZNF618Q5T7W0 954 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 GALNT17Q6IS24 598 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 EMSYQ7Z589 1322 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 TBCKQ8TEA7 893 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 LMBR1Q8WVP7 490 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 KIF2CQ99661 725 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 PHF20Q9BVI0 1012 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 C22orf23Q9BZE7 217 aa16.83■□□□□ 0.28
LIMS4-201ENST00000413601 FTOQ9C0B1 505 aaKnown RBP eCLIP16.83■□□□□ 0.28
LIMS4-201ENST00000413601 MTIF3Q9H2K0 278 aaKnown RBP16.83■□□□□ 0.28
LIMS4-201ENST00000413601 LAMA2P24043 3122 aaKnown RBP16.83■□□□□ 0.28
LIMS4-201ENST00000413601 EVPLQ92817 2033 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 NRCAMQ92823 1304 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 ATG7O95352 703 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 FDPSP14324 419 aaKnown RBP16.82■□□□□ 0.28
LIMS4-201ENST00000413601 THPOP40225 353 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 USP11P51784 963 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 ADAM17P78536 824 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 LENG9Q96B70 501 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 FAM161BQ96MY7 647 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 AZI2Q9H6S1 392 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 MTMR10Q9NXD2 777 aa16.82■□□□□ 0.28
LIMS4-201ENST00000413601 ZBBXA8MT70 800 aa16.81■□□□□ 0.28
LIMS4-201ENST00000413601 NBNO60934 754 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms