RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 WDR64B1ANS9 1081 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 SLC37A4O43826 429 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 PLA2G4BP0C869 781 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 GCFC2P16383 781 aaKnown RBP11.37□□□□□ -0.59
COL6A3-205ENST00000392004 STAT5BP51692 787 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 UBASH3AP57075 661 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 CATSPERGQ6ZRH7 1159 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 AFG1LQ8WV93 481 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 FAM217BQ9NTX9 383 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-205ENST00000392004 C5P01031 1676 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 NPHP3-ACAD11A0A0J9YXS1 232 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 FOXN1O15353 648 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 GSDMDP57764 484 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 DMP1Q13316 513 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-205ENST00000392004 NEDD9Q14511 834 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 KIAA1755Q5JYT7 1200 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 ZBED2Q9BTP6 218 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 ZNF302Q9NR11 478 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 ZNF286BP0CG31 522 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 RGS2P41220 211 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 CRHR2Q13324 411 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 TATDN1Q6P1N9 297 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 ZBTB8OSQ8IWT0 167 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 RGS22Q8NE09 1264 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 POMGNT1Q8WZA1 660 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 SDK1Q7Z5N4 2213 aa11.37□□□□□ -0.59
COL6A3-205ENST00000392004 MACROD2A1Z1Q3 448 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 PRPF6O94906 941 aaKnown RBP11.36□□□□□ -0.59
COL6A3-205ENST00000392004 SNW1Q13573 536 aaKnown RBP11.36□□□□□ -0.59
COL6A3-205ENST00000392004 FAM26FQ5R3K3 315 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 DPF3Q92784 378 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 ZSWIM4Q9H7M6 989 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 FRMD4BQ9Y2L6 1034 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 LTBP3Q9NS15 1303 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 IFRD2Q12894 506 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-205ENST00000392004 KMT5BQ4FZB7 885 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 CATSPER4Q7RTX7 472 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 SH3TC2Q8TF17 1288 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 SCFD2Q8WU76 684 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 MRFAP1L1Q96HT8 127 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 NACC1Q96RE7 527 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 IMPG2Q9BZV3 1241 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 TAB2Q9NYJ8 693 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 COL22A1Q8NFW1 1626 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-205ENST00000392004 FGFR1OPO95684 399 aaKnown RBP11.36□□□□□ -0.59
COL6A3-205ENST00000392004 FDX1P10109 184 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 COPB2P35606 906 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 CCDC144BQ3MJ40 725 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 ABI1Q8IZP0 508 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 JAKMIP2Q96AA8 810 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 ZIC5Q96T25 663 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 PHF20Q9BVI0 1012 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 SRRTQ9BXP5 876 aaKnown RBP11.36□□□□□ -0.59
COL6A3-205ENST00000392004 KMT5AQ9NQR1 393 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 NFE2L3Q9Y4A8 694 aa11.36□□□□□ -0.59
COL6A3-205ENST00000392004 WDR19Q8NEZ3 1342 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 hCG_1984214I3L0E3 225 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 ADCY3O60266 1144 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 FAM193AP78312 1265 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 ZNF713Q8N859 430 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-205ENST00000392004 MNS1Q8NEH6 495 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 CHST13Q8NET6 341 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 USP20Q9Y2K6 914 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 PCDHA10Q9Y5I2 948 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 ZEB2O60315 1214 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 PQBP1O60828 265 aaKnown RBP11.35□□□□□ -0.59
COL6A3-205ENST00000392004 CMA1P23946 247 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 TRAPPC10P48553 1259 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 SOX10P56693 466 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 NTRK3Q16288 839 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 PKN1Q16512 942 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 KRBA2Q6ZNG9 492 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 GMCL1P1Q8NEA9 526 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 TRAPPC12Q8WVT3 735 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 EIF2AK1Q9BQI3 630 aaKnown RBP11.35□□□□□ -0.59
COL6A3-205ENST00000392004 PDCD2LQ9BRP1 358 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 MTA3Q9BTC8 594 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 BTBD7Q9P203 1132 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 SLC16A4O15374 487 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 ALDH1A1P00352 501 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 LONP1P36776 959 aaKnown RBP11.35□□□□□ -0.59
COL6A3-205ENST00000392004 QARSP47897 775 aaKnown RBP11.35□□□□□ -0.59
COL6A3-205ENST00000392004 UBXN1Q04323 297 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 RNASELQ05823 741 aaKnown RBP11.35□□□□□ -0.59
COL6A3-205ENST00000392004 CNNM4Q6P4Q7 775 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 FBXO38Q6PIJ6 1188 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 CXCL17Q6UXB2 119 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 ARMCX2Q7L311 632 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 RETREG2Q8NC44 543 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 IL31RAQ8NI17 732 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 PPP1R12CQ9BZL4 782 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 ZMYND12Q9H0C1 365 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 PDGFCQ9NRA1 345 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 IFNKQ9P0W0 207 aa11.35□□□□□ -0.59
COL6A3-205ENST00000392004 CETN3O15182 167 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 MAPK4P31152 587 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 ATL3Q6DD88 541 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 MCTP2Q6DN12 878 aa11.34□□□□□ -0.59
COL6A3-205ENST00000392004 TWF2Q6IBS0 349 aaKnown RBP11.34□□□□□ -0.59
COL6A3-205ENST00000392004 ARMCX5Q6P1M9 558 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms