RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 PCDHA4Q9UN74 947 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 H3BRJ5 948 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 NVLO15381 856 aaKnown RBP17.4■□□□□ 0.38
SHANK1-204ENST00000391814 UFL1O94874 794 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 TRIM59Q8IWR1 403 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 EYA3Q99504 573 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 RHBDL2Q9NX52 303 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 ZNF229Q9UJW7 825 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 SRRM1Q8IYB3 904 aaKnown RBP17.4■□□□□ 0.38
SHANK1-204ENST00000391814 KCTD6Q8NC69 237 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 ZC3H12CQ9C0D7 883 aaKnown RBP17.4■□□□□ 0.38
SHANK1-204ENST00000391814 PCDHB6Q9Y5E3 794 aa17.4■□□□□ 0.38
SHANK1-204ENST00000391814 YTHDC2Q9H6S0 1430 aaKnown RBP17.4■□□□□ 0.38
SHANK1-204ENST00000391814 DAB2P98082 770 aa17.39■□□□□ 0.38
SHANK1-204ENST00000391814 PTK2Q05397 1052 aa17.39■□□□□ 0.38
SHANK1-204ENST00000391814 KIF19Q2TAC6 998 aa17.39■□□□□ 0.38
SHANK1-204ENST00000391814 SH2D4AQ9H788 454 aa17.39■□□□□ 0.38
SHANK1-204ENST00000391814 STAP2Q9UGK3 403 aa17.39■□□□□ 0.38
SHANK1-204ENST00000391814 CTTNBP2Q8WZ74 1663 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 HSPA4LO95757 839 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 EPHB1P54762 984 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 CENPUQ71F23 418 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 PGBD1Q96JS3 809 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 NPC1L1Q9UHC9 1359 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 TNNC2P02585 160 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 KCNA3P22001 575 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 BBS9Q3SYG4 887 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 TBC1D10BQ4KMP7 808 aaPredicted RBP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 SLC26A7Q8TE54 656 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 DDX28Q9NUL7 540 aaKnown RBP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 GJA3Q9Y6H8 435 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 EIF3HO15372 352 aaKnown RBP eCLIP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 MDH1BQ5I0G3 518 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 FBXL13Q8NEE6 735 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 BPIFA3Q9BQP9 254 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 CUEDC2Q9H467 287 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 UHRF1BP1Q6BDS2 1440 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 HMGB2P26583 209 aaKnown RBP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 CUL3Q13618 768 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 LBHD1Q9BQE6 289 aaPredicted RBP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 OSBPL5Q9H0X9 879 aaPredicted RBP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 BABAM1Q9NWV8 329 aa17.39■□□□□ 0.37
SHANK1-204ENST00000391814 THRAP3Q9Y2W1 955 aaKnown RBP17.39■□□□□ 0.37
SHANK1-204ENST00000391814 HSPA6P17066 643 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 ERFP50548 548 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 NOP14P78316 857 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 PCIF1Q9H4Z3 704 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 IPO11Q9UI26 975 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 APOBEC2Q9Y235 224 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 UBAP1LF5GYI3 381 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 PPP4R4Q6NUP7 873 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 MIS12Q9H081 205 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 KIAA0232Q92628 1395 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 TCOF1Q13428 1488 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 MDH1P40925 334 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 FLOT2Q14254 428 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 ANO5Q75V66 913 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 WDR24Q96S15 920 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 CAPN9O14815 690 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 CDC25AP30304 524 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 IFRD2Q12894 506 aaPredicted RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 TPTE2Q6XPS3 522 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 TRIM11Q96F44 468 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 COPEO14579 308 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 NR5A1Q13285 461 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 DTX3LQ8TDB6 740 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 RBM17Q96I25 401 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 ING2Q9H160 280 aa17.38■□□□□ 0.37
SHANK1-204ENST00000391814 SRPRBQ9Y5M8 271 aaKnown RBP17.38■□□□□ 0.37
SHANK1-204ENST00000391814 CYP21A2P08686 494 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 XKR9Q5GH70 373 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 FAM186BQ8IYM0 893 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 SUPT20HQ8NEM7 779 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 MAP3K19Q56UN5 1328 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 A2MP01023 1474 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 MAP3K7CLP57077 242 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 CYP4A11Q02928 519 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 GALNT17Q6IS24 598 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 PDZD4Q76G19 769 aaPredicted RBP17.37■□□□□ 0.37
SHANK1-204ENST00000391814 DISC1Q9NRI5 854 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 USP17L12C9JPN9 530 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 USP17L21D6R901 530 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 GOLGA8SH3BPF8 625 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 GOLGA8MH3BSY2 632 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 PRR29P0C7W0 189 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 DMP1Q13316 513 aaPredicted RBP17.37■□□□□ 0.37
SHANK1-204ENST00000391814 LRRC47Q8N1G4 583 aaKnown RBP17.37■□□□□ 0.37
SHANK1-204ENST00000391814 SKA2Q8WVK7 121 aaPredicted RBP17.37■□□□□ 0.37
SHANK1-204ENST00000391814 NT5C1BQ96P26 610 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 TLK1Q9UKI8 766 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 BIVM-ERCC5R4GMW8 1640 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 FANCAO15360 1455 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 ZNF185O15231 689 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 SKOR1P84550 965 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 RNF169Q8NCN4 708 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 PSPC1Q8WXF1 523 aaKnown RBP17.37■□□□□ 0.37
SHANK1-204ENST00000391814 CCDC90BQ9GZT6 254 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 NDST4Q9H3R1 872 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 CYP4F11Q9HBI6 524 aa17.37■□□□□ 0.37
SHANK1-204ENST00000391814 SLC40A1Q9NP59 571 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms