RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 COPS2P61201 443 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 NCALDP61601 193 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 FAM153CQ494X1 144 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 AMOTQ4VCS5 1084 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 FKBP15Q5T1M5 1219 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 IRGCQ6NXR0 463 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 DIS3L2Q8IYB7 885 aaKnown RBP8.89□□□□□ -0.99
ATG4A-201ENST00000343524 CNBD1Q8NA66 436 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 KIFAP3Q92845 792 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 PPP1R14BQ96C90 147 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 KLHL29Q96CT2 875 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 OPTNQ96CV9 577 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 FGD4Q96M96 766 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 KCNK17Q96T54 332 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 EYA1Q99502 592 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 TTYH3Q9C0H2 523 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 CSRNP2Q9H175 543 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 ECT2Q9H8V3 914 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.89□□□□□ -0.996e-6■■■■■ 48.1
ATG4A-201ENST00000343524 LRRC4BQ9NT99 713 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 PANK4Q9NVE7 773 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 FAM153AQ9UHL3 310 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 BLOC1S6Q9UL45 172 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 RPL26L1Q9UNX3 145 aaKnown RBP8.89□□□□□ -0.99
ATG4A-201ENST00000343524 LRRC42Q9Y546 428 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 PCDHA13Q9Y5I0 950 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 NFS1Q9Y697 457 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 SLC4A7Q9Y6M7 1214 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 CAPN6Q9Y6Q1 641 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 NHSQ6T4R5 1651 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 USP54Q70EL1 1684 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 GOLGA8AA7E2F4 631 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 F8W031 263 aaPredicted RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ATP5HO75947 161 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 SUN1O94901 812 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 FMNL1O95466 1100 aaPredicted RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 MMEP08473 750 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 MYBP10242 640 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ABL2P42684 1182 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 AFMP43652 599 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 PPARAQ07869 468 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TMED1Q13445 227 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 KRT71Q3SY84 523 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 PPP1R15BQ5SWA1 713 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ARHGAP27Q6ZUM4 889 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ERICH1Q86X53 443 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ZNF507Q8TCN5 953 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 DYDC1Q8WWB3 177 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TLCD1Q96CP7 247 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ABHD8Q96I13 439 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 CDCA7Q9BWT1 371 aaPredicted RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ARHGEF3Q9NR81 526 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 GJB4Q9NTQ9 266 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ATXN10Q9UBB4 475 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 CIDEBQ9UHD4 219 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 SCOCQ9UIL1 159 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 NOVA2Q9UNW9 492 aaKnown RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 PHF24Q9UPV7 400 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 C10orf71Q711Q0 1435 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 SLIT3O75094 1523 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 RCCD1A6NED2 376 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TRIM75PA6NK02 468 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 PHF20L1A8MW92 1017 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 IGF2BP3O00425 579 aaKnown RBP eCLIP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ZNF213O14771 459 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 MOCS3O95396 460 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 A1BGP04217 495 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 MYL1P05976 194 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 XBP1P17861 261 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TMOD1P28289 359 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TPP2P29144 1249 aaPredicted RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ANTXR2P58335 489 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 MAGOHP61326 146 aaKnown RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TFCP2Q12800 502 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ENOX2Q16206 610 aaKnown RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 APOA5Q6Q788 366 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 UBLCP1Q8WVY7 318 aaPredicted RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 TAF4BQ92750 862 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 MAGOHBQ96A72 148 aaKnown RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 NEUROD6Q96NK8 337 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 ZNF317Q96PQ6 595 aaPredicted RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 DBNDD2Q9BQY9 259 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 FAM167BQ9BTA0 163 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 IQCGQ9H095 443 aaKnown RBP8.88□□□□□ -0.99
ATG4A-201ENST00000343524 GOPCQ9HD26 462 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 WNK3Q9BYP7 1800 aa8.88□□□□□ -0.99
ATG4A-201ENST00000343524 CCDC188H7C350 402 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 PSMA7O14818 248 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 RARAP10276 462 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 IFNAR1P17181 557 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 GNAQP50148 359 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 KIF11P52732 1056 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 RCAN1P53805 252 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 PARP6Q2NL67 630 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 CWF19L2Q2TBE0 894 aaKnown RBP8.87□□□□□ -0.99
ATG4A-201ENST00000343524 FAM133BQ5BKY9 247 aaKnown RBP8.87□□□□□ -0.99
ATG4A-201ENST00000343524 EPHA10Q5JZY3 1008 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 SGMS1Q86VZ5 419 aa8.87□□□□□ -0.99
ATG4A-201ENST00000343524 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.87□□□□□ -0.998e-6■■■■■ 46.4
ATG4A-201ENST00000343524 RNF168Q8IYW5 571 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms