RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 SEPT11Q9NVA2 429 aaKnown RBP9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 TNPO2O14787 897 aaKnown RBP9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 DHX15O43143 795 aaKnown RBP9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 MYCLP12524 364 aaPredicted RBP9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 OTOP1Q7RTM1 612 aa9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 DPP9Q86TI2 863 aa9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 TTC12Q9H892 705 aaPredicted RBP9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 STK17AQ9UEE5 414 aa9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 LRWD1Q9UFC0 647 aa9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 ARID2Q68CP9 1835 aa9.45□□□□□ -0.9
PTPDC1-201ENST00000288976 MYO9BQ13459 2157 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 PGK2P07205 417 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 RNF214Q8ND24 703 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 TINF2Q9BSI4 451 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 R3HDMLQ9H3Y0 253 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 KCNH3Q9ULD8 1083 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 TRAK2O60296 914 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 GAS7O60861 476 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 FKTNO75072 461 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 ARP10275 920 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 RFX1P22670 979 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 EPHA7Q15375 998 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 CCDC183Q5T5S1 534 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 CLSTN2Q9H4D0 955 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 Q9Y3F1 56 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 LYPLA2O95372 231 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 TXKP42681 527 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 UBXN2AP68543 259 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 E2F4Q16254 413 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 SKIDA1Q1XH10 827 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 RBM43Q6ZSC3 357 aaKnown RBP9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 CALML4Q96GE6 196 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 CLIC6Q96NY7 704 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 DISC1Q9NRI5 854 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 PPME1Q9Y570 386 aa9.44□□□□□ -0.9
PTPDC1-201ENST00000288976 FRMPD3Q5JV73 1810 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 DKC1O60832 514 aaKnown RBP eCLIP9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 NEBLO76041 1014 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 ITGB3BPQ13352 177 aaPredicted RBP9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 TTLL4Q14679 1199 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 KRT79Q5XKE5 535 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 CNNM4Q6P4Q7 775 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 CABP7Q86V35 215 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 TRIM47Q96LD4 638 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 LRRC27Q9C0I9 530 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 ABHD16BQ9H3Z7 469 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 ATG7O95352 703 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 TECP42680 631 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 SYKP43405 635 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 SASS6Q6UVJ0 657 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 SCFD2Q8WU76 684 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 PURBQ96QR8 312 aaKnown RBP9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 UNC45AQ9H3U1 944 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 BMP2KQ9NSY1 1161 aaPredicted RBP9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 GPR25O00155 361 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 SSR1P43307 286 aaKnown RBP9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 NDUFA8P51970 172 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 NKX3-2P78367 333 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 NPLOC4Q8TAT6 608 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 CYP2W1Q8TAV3 490 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 NOD1Q9Y239 953 aa9.43□□□□□ -0.9
PTPDC1-201ENST00000288976 WDR64B1ANS9 1081 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 KINO60870 393 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 CSPG5O95196 566 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 RPA1P27694 616 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 CTGFP29279 349 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 GRIN1Q05586 938 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 IQSEC1Q6DN90 963 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 TAPT1Q6NXT6 567 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 CCDC62Q6P9F0 684 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 IQUBQ8NA54 791 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 PXYLP1Q8TE99 480 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 DRC1Q96MC2 740 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 GTPBP4Q9BZE4 634 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 JPH1Q9HDC5 661 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 WDR81Q562E7 1941 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 PSMC4P43686 418 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 METTL7BQ6UX53 244 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 AFAP1L1Q8TED9 768 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 MMTAG2Q9BU76 263 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 SLC9A2Q9UBY0 812 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 MRVI1Q9Y6F6 885 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 ACTN4O43707 911 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 TBC1D8O95759 1140 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 SNAI1O95863 264 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 HOXD8P13378 290 aaPredicted RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 UBA1P22314 1058 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 UBA7P41226 1012 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 KRBA2Q6ZNG9 492 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 TNMDQ9H2S6 317 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 DDX41Q9UJV9 622 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 IGSF9BQ9UPX0 1349 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 ZNF202O95125 648 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 SLFN14P0C7P3 912 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 XRCC6P12956 609 aaKnown RBP eCLIP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 CELF3Q5SZQ8 465 aaKnown RBP9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 MIS18BP1Q6P0N0 1132 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 PDXDC2PQ6P474 469 aa9.42□□□□□ -0.9
PTPDC1-201ENST00000288976 SH3RF1Q7Z6J0 888 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms