RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 LRWD1Q9UFC0 647 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 STRIP2Q9ULQ0 834 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 PSMD14O00487 310 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 UPP2O95045 317 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 CPB1P15086 417 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 ERCC3P19447 782 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 DYNLL1P63167 89 aaKnown RBP8.51□□□□□ -1.05
USP3-201ENST00000268049 PI16Q6UXB8 463 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 TRIM50Q86XT4 487 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 SRPK1Q96SB4 655 aaKnown RBP8.51□□□□□ -1.05
USP3-201ENST00000268049 ZNF577Q9BSK1 485 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 KCNK9Q9NPC2 374 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 SMIM23A6NLE4 172 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 RXRAP19793 462 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 ZNF445P59923 1031 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 MTX1Q13505 466 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 LMBRD2Q68DH5 695 aaPredicted RBP8.51□□□□□ -1.05
USP3-201ENST00000268049 PTF1AQ7RTS3 328 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 STAG1Q8WVM7 1258 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 UPF1Q92900 1129 aaKnown RBP eCLIP8.51□□□□□ -1.05
USP3-201ENST00000268049 ATP6V0A4Q9HBG4 840 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 PALD1Q9ULE6 856 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 XRN1Q8IZH2 1706 aaKnown RBP8.51□□□□□ -1.05
USP3-201ENST00000268049 SMCO2A6NFE2 343 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 EXOC3O60645 756 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PPFIA2O75334 1257 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 ZWINTO95229 277 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PPARGP37231 505 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 VWA3BQ502W6 1294 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 GNASQ5JWF2 1037 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 NECAB1Q8N987 351 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 ARHGEF2Q92974 986 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 EMILIN2Q9BXX0 1053 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 UBE2OQ9C0C9 1292 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 C2orf40Q9H1Z8 148 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 LRRC4BQ9NT99 713 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 A0A087WUV0 522 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 LOC102724159A0A0B4J2E5 919 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 POLRMTO00411 1230 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 SLC27A2O14975 620 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PPFIA4O75335 1185 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 RPSAP08865 295 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 SRGNP10124 158 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 KIF5AQ12840 1032 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PWP2Q15269 919 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 CYP4A22Q5TCH4 519 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 MAEAQ7L5Y9 396 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PALM2Q8IXS6 379 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 IQUBQ8NA54 791 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 MCUR1Q96AQ8 359 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 CAPNS2Q96L46 248 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 TRIM62Q9BVG3 475 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 THG1LQ9NWX6 298 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 IFT172Q9UG01 1749 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 FRMPD2Q68DX3 1309 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 CEP104O60308 925 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 CTNND1O60716 968 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 GNRH1P01148 92 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 STMN1P16949 149 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 MYL7Q01449 175 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PLCB3Q01970 1234 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 GLB1LQ6UWU2 654 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 RUFY3Q7L099 469 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 VSIG1Q86XK7 387 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 CCDC170Q8IYT3 715 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PRPF38AQ8NAV1 312 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 SLC24A3Q9HC58 644 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 SERTAD1Q9UHV2 236 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 GUCA1BQ9UMX6 200 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 RGL2O15211 777 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 GH2P01242 217 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 ADD2P35612 726 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 GJC1P36383 396 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 DPYDQ12882 1025 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PRR16Q569H4 304 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 ARHGAP24Q8N264 748 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 CHST13Q8NET6 341 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 ZC3H15Q8WU90 426 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 FAM84BQ96KN1 310 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 FAM81BQ96LP2 452 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 SPATA33Q96N06 139 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 COLEC11Q9BWP8 271 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 NKIRAS1Q9NYS0 192 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 WDR46O15213 610 aaKnown RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 DYNC1LI2O43237 492 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 PRDX5P30044 214 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 TXKP42681 527 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 PSMC4P43686 418 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 HMGCS2P54868 508 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 MTERF2Q49AM1 385 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 SLC10A5Q5PT55 438 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 UBLCP1Q8WVY7 318 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 ABTB1Q969K4 478 aaPredicted RBP8.5□□□□□ -1.05
USP3-201ENST00000268049 ANTXR1Q9H6X2 564 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 SLC28A3Q9HAS3 691 aa8.5□□□□□ -1.05
USP3-201ENST00000268049 NWD1Q149M9 1564 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 RRN3P2A6NIE6 340 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 TXNDC9O14530 226 aa8.49□□□□□ -1.05
USP3-201ENST00000268049 NKRFO15226 690 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP3-201ENST00000268049 CACNB3P54284 484 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms