RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 DBNDD1Q9H9R9 158 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 LRRC4Q9HBW1 653 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 EPS15L1Q9UBC2 864 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 TLK1Q9UKI8 766 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.66□□□□□ -0.06
SF3A1-201ENST00000215793 ARHGEF5Q12774 1597 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 ARHGEF6Q15052 776 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 BSDC1Q9NW68 430 aaPredicted RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 MID2Q9UJV3 735 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 PCDHA13Q9Y5I0 950 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 GCC2Q8IWJ2 1684 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 EFCAB6Q5THR3 1501 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 MOCS3O95396 460 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 SNX1Q13596 522 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 ALKBH5Q6P6C2 394 aaKnown RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 MCUQ8NE86 351 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 PI4K2BQ8TCG2 481 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 CALN1Q9BXU9 219 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 NXF1Q9UBU9 619 aaKnown RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 PRAMEF22A3QJZ6 481 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 TTC1Q99614 292 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 NOC2LQ9Y3T9 749 aaKnown RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 ANGPTL3Q9Y5C1 460 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 ZMYND10O75800 440 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 SEC31AO94979 1220 aaKnown RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 BASP1P80723 227 aaKnown RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 AP3B2Q13367 1082 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 TTLL11Q8NHH1 800 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 STRBPQ96SI9 672 aaKnown RBP14.65□□□□□ -0.06
SF3A1-201ENST00000215793 MXD3Q9BW11 206 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 SYNMO15061 1565 aa14.65□□□□□ -0.06
SF3A1-201ENST00000215793 LRRD1A4D1F6 860 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 H7C1W4 665 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 CCDC188H7C350 402 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 XPAP23025 273 aaPredicted RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 MECOMQ03112 1051 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 SLFN12LQ6IEE8 588 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 EFCAB13Q8IY85 973 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 FMO2Q99518 471 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 NLRP1Q9C000 1473 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 RASGRF2O14827 1237 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PRPSAP2O60256 369 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 CXCR5P32302 372 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 CDK8P49336 464 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 GRAPQ13588 217 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 DARS2Q6PI48 645 aaKnown RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 CLEC4GQ6UXB4 293 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 SIRT2Q8IXJ6 389 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 GRAPLQ8TC17 118 aaPredicted RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PARD6BQ9BYG5 372 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 COA1Q9GZY4 146 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PIH1D3Q9NQM4 214 aaKnown RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 RASIP1Q5U651 963 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 TTC19Q6DKK2 380 aaPredicted RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 EMBQ6PCB8 327 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 ARMCX2Q7L311 632 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 ATP6V1E2Q96A05 226 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 EXOC4Q96A65 974 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 KLHL29Q96CT2 875 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 DYNLL2Q96FJ2 89 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 SPTLC3Q9NUV7 552 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 CPSF3Q9UKF6 684 aaKnown RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PPP1R9AQ9ULJ8 1098 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PPFIA2O75334 1257 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 GCKP35557 465 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 CUL1Q13616 776 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 RCN2Q14257 317 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 TMED2Q15363 201 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 ZKSCAN8Q15776 578 aaPredicted RBP14.64□□□□□ -0.07
SF3A1-201ENST00000215793 MTERF2Q49AM1 385 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PDIK1LQ8N165 341 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 C7orf31Q8N865 590 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 MB21D1Q8N884 522 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 PDZD8Q8NEN9 1154 aa14.64□□□□□ -0.07
SF3A1-201ENST00000215793 IPO5O00410 1097 aaKnown RBP14.63□□□□□ -0.07
SF3A1-201ENST00000215793 LARGE1O95461 756 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 C2orf54Q08AI8 447 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 KRT31Q15323 416 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 PDXDC2PQ6P474 469 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 KCTD6Q8NC69 237 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.63□□□□□ -0.07
SF3A1-201ENST00000215793 EFHD1Q9BUP0 239 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 SCINQ9Y6U3 715 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.63□□□□□ -0.07
SF3A1-201ENST00000215793 CYP27A1Q02318 531 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 IQCB1Q15051 598 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 OR6B2Q6IFH4 312 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 A0A087WWV3 80 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 MFAP3LO75121 409 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 KRT10P13645 584 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 RWDD2BP57060 319 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 DR1Q01658 176 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 NNTQ13423 1086 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 TMEM179Q6ZVK1 233 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 PCGF5Q86SE9 256 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 KSR1Q8IVT5 923 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 MTA3Q9BTC8 594 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 BHMT2Q9H2M3 363 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 THEGQ9P2T0 379 aa14.63□□□□□ -0.07
SF3A1-201ENST00000215793 ADAMTS1Q9UHI8 967 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms