RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C PBN1P25580 416 aa3.11□□□□□ -1.91
LCB4YOR171C SPR1P32603 445 aa3.11□□□□□ -1.91
LCB4YOR171C GDA1P32621 518 aa3.11□□□□□ -1.91
LCB4YOR171C YME2P32843 850 aa3.11□□□□□ -1.91
LCB4YOR171C IMP3P32899 183 aaPredicted RBP3.11□□□□□ -1.91
LCB4YOR171C RRP1P35178 278 aaPredicted RBP3.11□□□□□ -1.91
LCB4YOR171C KES1P35844 434 aaKnown RBP3.11□□□□□ -1.91
LCB4YOR171C YKL071WP36086 256 aa3.11□□□□□ -1.91
LCB4YOR171C AIM29P36154 155 aa3.11□□□□□ -1.91
LCB4YOR171C MAL33P38157 468 aa3.11□□□□□ -1.91
LCB4YOR171C SWC5P38326 303 aa3.11□□□□□ -1.91
LCB4YOR171C END3P39013 349 aa3.11□□□□□ -1.91
LCB4YOR171C FHL1P39521 936 aa3.11□□□□□ -1.91
LCB4YOR171C SOP4P39543 234 aaPredicted RBP3.11□□□□□ -1.91
LCB4YOR171C YFL015CP43578 164 aa3.11□□□□□ -1.91
LCB4YOR171C SAD1P43589 448 aa3.11□□□□□ -1.91
LCB4YOR171C STB2P46679 850 aa3.11□□□□□ -1.91
LCB4YOR171C LSM1P47017 172 aaKnown RBP3.11□□□□□ -1.91
LCB4YOR171C YHC3P47040 408 aa3.11□□□□□ -1.91
LCB4YOR171C RIB4P50861 169 aaPredicted RBP3.11□□□□□ -1.91
LCB4YOR171C MPS2P53159 387 aa3.11□□□□□ -1.91
LCB4YOR171C RRN9P53437 365 aa3.11□□□□□ -1.91
LCB4YOR171C CSL4P53859 292 aaPredicted RBP3.11□□□□□ -1.91
LCB4YOR171C INN1P53901 409 aa3.11□□□□□ -1.91
LCB4YOR171C ATG21Q02887 496 aa3.11□□□□□ -1.91
LCB4YOR171C YDR239CQ03780 787 aa3.11□□□□□ -1.91
LCB4YOR171C DCS1Q06151 350 aa3.11□□□□□ -1.91
LCB4YOR171C RTT109Q07794 436 aa3.11□□□□□ -1.91
LCB4YOR171C CRT10Q08226 957 aa3.11□□□□□ -1.91
LCB4YOR171C ESA1Q08649 445 aa3.11□□□□□ -1.91
LCB4YOR171C BTS1Q12051 335 aa3.11□□□□□ -1.91
LCB4YOR171C MSH5Q12175 901 aa3.11□□□□□ -1.91
LCB4YOR171C RPL7BQ12213 244 aaKnown RBP3.11□□□□□ -1.91
LCB4YOR171C NDJ1Q12366 352 aa3.11□□□□□ -1.91
LCB4YOR171C NOT5Q12514 560 aaPredicted RBP3.11□□□□□ -1.91
LCB4YOR171C YER175W-AQ8TGU4 54 aa3.11□□□□□ -1.91
LCB4YOR171C RPN13O13563 156 aa3.1□□□□□ -1.91
LCB4YOR171C TDH2P00358 332 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C TDH3P00359 332 aaKnown RBP RIP-Chip data3.1□□□□□ -1.91not detected
LCB4YOR171C GPH1P06738 902 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C MATALPHA2P0CY08 210 aa3.1□□□□□ -1.91
LCB4YOR171C HMLALPHA2P0CY09 210 aa3.1□□□□□ -1.91
LCB4YOR171C PET122P10355 254 aa3.1□□□□□ -1.91
LCB4YOR171C SCH9P11792 824 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C RPL3P14126 387 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C ADH7P25377 361 aa3.1□□□□□ -1.91
LCB4YOR171C RHB1P25378 209 aa3.1□□□□□ -1.91
LCB4YOR171C ADE1P27616 306 aa3.1□□□□□ -1.91
LCB4YOR171C CIN8P27895 1000 aa3.1□□□□□ -1.91
LCB4YOR171C PPA2P28239 310 aa3.1□□□□□ -1.91
LCB4YOR171C CWP1P28319 239 aa3.1□□□□□ -1.91
LCB4YOR171C PEX3P28795 441 aa3.1□□□□□ -1.91
LCB4YOR171C YMC1P32331 307 aa3.1□□□□□ -1.91
LCB4YOR171C SPO23P33757 523 aa3.1□□□□□ -1.91
LCB4YOR171C AGP2P38090 596 aa3.1□□□□□ -1.91
LCB4YOR171C KTR3P38130 404 aaPredicted RBP3.1□□□□□ -1.91
LCB4YOR171C GAB1P41733 394 aa3.1□□□□□ -1.91
LCB4YOR171C YJL107CP42947 387 aa3.1□□□□□ -1.91
LCB4YOR171C HIT1P46973 164 aa3.1□□□□□ -1.91
LCB4YOR171C COX16P47081 118 aa3.1□□□□□ -1.91
LCB4YOR171C SSN8P47821 323 aa3.1□□□□□ -1.91
LCB4YOR171C VOA1P53262 265 aa3.1□□□□□ -1.91
LCB4YOR171C YGR127WP53275 312 aa3.1□□□□□ -1.91
LCB4YOR171C COP1P53622 1201 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C DBP6P53734 629 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C NOP13P53883 403 aaKnown RBP RIP-Chip data3.1□□□□□ -1.91not detected
LCB4YOR171C APM1Q00776 475 aaPredicted RBP3.1□□□□□ -1.91
LCB4YOR171C YPL108WQ02872 168 aaPredicted RBP3.1□□□□□ -1.91
LCB4YOR171C INA17Q02888 182 aa3.1□□□□□ -1.91
LCB4YOR171C PRM15Q03262 622 aa3.1□□□□□ -1.91
LCB4YOR171C APC4Q04601 652 aa3.1□□□□□ -1.91
LCB4YOR171C YDR222WQ04925 415 aa3.1□□□□□ -1.91
LCB4YOR171C YLR283WQ05867 314 aa3.1□□□□□ -1.91
LCB4YOR171C STP3Q05937 343 aa3.1□□□□□ -1.91
LCB4YOR171C VTA1Q06263 330 aa3.1□□□□□ -1.91
LCB4YOR171C SDO1Q07953 250 aaKnown RBP3.1□□□□□ -1.91
LCB4YOR171C DDC1Q08949 612 aa3.1□□□□□ -1.91
LCB4YOR171C GRE1Q08969 168 aa3.1□□□□□ -1.91
LCB4YOR171C NUS1Q12063 375 aa3.1□□□□□ -1.91
LCB4YOR171C FMP16Q12497 93 aa3.1□□□□□ -1.91
LCB4YOR171C ATP2P00830 511 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C CHO2P05374 869 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C RPL27AP0C2H6 136 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C RPL27BP0C2H7 136 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C MATALPHA1P0CY06 175 aa3.09□□□□□ -1.91
LCB4YOR171C HMLALPHA1P0CY07 175 aa3.09□□□□□ -1.91
LCB4YOR171C NHP6BP11633 99 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C SPO7P18410 259 aa3.09□□□□□ -1.91
LCB4YOR171C KGD2P19262 463 aaPredicted RBP3.09□□□□□ -1.91
LCB4YOR171C ZRC1P20107 442 aa3.09□□□□□ -1.91
LCB4YOR171C IDH2P28241 369 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C RML2P32611 393 aa3.09□□□□□ -1.91
LCB4YOR171C GCG1P32656 232 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C UGP1P32861 499 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C HCS1P34243 683 aa3.09□□□□□ -1.91
LCB4YOR171C CPR5P35176 225 aa3.09□□□□□ -1.91
LCB4YOR171C DBP7P36120 742 aaKnown RBP3.09□□□□□ -1.91
LCB4YOR171C CAF4P36130 643 aa3.09□□□□□ -1.91
LCB4YOR171C AME1P38313 324 aa3.09□□□□□ -1.91
LCB4YOR171C LNP1P38878 278 aa3.09□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms