RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	HSH155	P49955	971 aa	Known RBP	4.62	□□□□□ -1.67
RRP40	YOL142W	SHS1	Q07657	551 aa		4.62	□□□□□ -1.67
RRP40	YOL142W	YEH1	Q07804	573 aa		4.62	□□□□□ -1.67
RRP40	YOL142W	YPT6	Q99260	215 aa		4.62	□□□□□ -1.67
RRP40	YOL142W	RPL15A	P05748	204 aa	Known RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	SEC53	P07283	254 aa	Known RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	APE1	P14904	514 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	EST1	P17214	699 aa	Predicted RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	ART10	P18634	518 aa	Known RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	CDC42	P19073	191 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	MPE1	P35728	441 aa	Known RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	YHR054C	P38780	354 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	CTM1	P38818	585 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	ESL1	P40456	1118 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
RRP40	YOL142W	ALT2	P52892	507 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	DRN1	P53255	507 aa	Known RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	ALG11	P53954	548 aa	Known RBP	4.61	□□□□□ -1.67
RRP40	YOL142W	PPM1	Q04081	328 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	GIS3	Q12418	502 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	AHC1	Q12433	566 aa		4.61	□□□□□ -1.67
RRP40	YOL142W	ASP3-2	P0CX77	362 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	ASP3-3	P0CX78	362 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	ASP3-4	P0CX79	362 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	ASP3-1	P0CZ17	362 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	NAT1	P12945	854 aa	Known RBP	4.6	□□□□□ -1.67
RRP40	YOL142W	PHO13	P19881	312 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	RSA4	P25382	515 aa	Known RBP	4.6	□□□□□ -1.67
RRP40	YOL142W	PRR1	P28708	518 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	ATS1	P31386	333 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	CSE2	P33308	149 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	LOS1	P33418	1100 aa	Predicted RBP	4.6	□□□□□ -1.67
RRP40	YOL142W	MDM31	P38880	579 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	YHR210C	P38893	341 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	VPS52	P39904	641 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	IPI3	P53877	555 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	YLR297W	Q05899	129 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	DNL4	Q08387	944 aa	Predicted RBP	4.6	□□□□□ -1.67
RRP40	YOL142W	YOR365C	Q08844	703 aa		4.6	□□□□□ -1.67
RRP40	YOL142W	PEP4	P07267	405 aa	Known RBP	4.59	□□□□□ -1.67
RRP40	YOL142W	ADK2	P26364	225 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	NDC1	P32500	655 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	SWI3	P32591	825 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	SEF1	P34228	1148 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	HEL1	P36113	551 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	KRE9	P39005	276 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	ALG5	P40350	334 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	TFG2	P41896	400 aa	Predicted RBP	4.59	□□□□□ -1.67
RRP40	YOL142W	RTT101	P47050	842 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	YJR154W	P47181	346 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	COS5	P47187	383 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	VPS75	P53853	264 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	RPA49	Q01080	415 aa	Predicted RBP	4.59	□□□□□ -1.67
RRP40	YOL142W	PNG1	Q02890	363 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	GIR2	Q03768	265 aa	Predicted RBP	4.59	□□□□□ -1.67
RRP40	YOL142W	RPC11	Q04307	110 aa	Predicted RBP	4.59	□□□□□ -1.67
RRP40	YOL142W	CDD1	Q06549	142 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	PPT2	Q12036	173 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	SGT2	Q12118	346 aa	Known RBP	4.59	□□□□□ -1.67
RRP40	YOL142W	CTF3	Q12748	733 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	YDR034W-B	Q6Q5X2	51 aa		4.59	□□□□□ -1.67
RRP40	YOL142W	PRP16	P15938	1071 aa	Predicted RBP	4.58	□□□□□ -1.68
RRP40	YOL142W	CLC1	P17891	233 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	GFD2	P25370	566 aa	Known RBP	4.58	□□□□□ -1.68
RRP40	YOL142W	PTR2	P32901	601 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	RFS1	P38234	210 aa	Known RBP	4.58	□□□□□ -1.68
RRP40	YOL142W	SPT8	P38915	602 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	TMA108	P40462	946 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	CPR7	P47103	393 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	CWC21	Q03375	135 aa	Known RBP	4.58	□□□□□ -1.68
RRP40	YOL142W	SCW10	Q04951	389 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	HSH49	Q99181	213 aa	Predicted RBP	4.58	□□□□□ -1.68
RRP40	YOL142W	AI5_BETA	Q9ZZX0	354 aa		4.58	□□□□□ -1.68
RRP40	YOL142W	UBR1	P19812	1950 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	GAL80	P04387	435 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	RAD52	P06778	471 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	CHS1	P08004	1131 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	MTF1	P14908	341 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	AMD1	P15274	810 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	RRT12	P25381	491 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	NOP4	P37838	685 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	HMT1	P38074	348 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	RPH1	P39956	796 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
RRP40	YOL142W	RPR2	P40571	144 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	MRX6	P48564	524 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	IMD4	P50094	524 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	IMP4	P53941	290 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	RLI1	Q03195	608 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	ERP1	Q05359	219 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	ABP140	Q08641	628 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	RCN2	Q12044	265 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	PKH2	Q12236	1081 aa	Known RBP	4.57	□□□□□ -1.68
RRP40	YOL142W	SET6	Q12529	373 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	YJR112W-A	Q3E743	109 aa		4.57	□□□□□ -1.68
RRP40	YOL142W	HAP2	P06774	265 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	OLE1	P21147	510 aa	Known RBP	4.56	□□□□□ -1.68
RRP40	YOL142W	DAL2	P25335	343 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	ELO2	P25358	347 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	SPC110	P32380	944 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms