RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	RMP1	Q12530	201 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	ARG4	P04076	463 aa	Predicted RBP	4.7	□□□□□ -1.66
NUP116	YMR047C	TUB1	P09733	447 aa	Known RBP	4.7	□□□□□ -1.66
NUP116	YMR047C	SPO16	P17122	198 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	AMS1	P22855	1083 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	CPR5	P35176	225 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	ARA1	P38115	344 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	POP7	P38291	140 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	TAE1	P38340	232 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	SSP120	P39931	234 aa	Known RBP	4.7	□□□□□ -1.66
NUP116	YMR047C	YER184C	P39961	794 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	RGI1	P40043	161 aa	Predicted RBP	4.7	□□□□□ -1.66
NUP116	YMR047C	ICE2	P40499	491 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	TAF4	P50105	388 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	NHX1	Q04121	633 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	ARG7	Q04728	441 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	FMP42	Q04991	504 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	PAL1	Q05518	499 aa	Known RBP	4.7	□□□□□ -1.66
NUP116	YMR047C	SLD7	Q08457	257 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	ESA1	Q08649	445 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	MMP1	Q12372	583 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	VCX1	Q99385	411 aa		4.7	□□□□□ -1.66
NUP116	YMR047C	GCR1	P07261	785 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	SPT15	P13393	240 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	VPS34	P22543	875 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	MVD1	P32377	396 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	NIP1	P32497	812 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	THI80	P35202	319 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	RPF2	P36160	344 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	YBP1	P38315	674 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	YHR045W	P38775	560 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	EMP65	P40085	556 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	ELP2	P42935	788 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	FMP33	P46998	180 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	TAH11	P47112	604 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	EMC4	P53073	190 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	NPY1	P53164	384 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	CAF40	P53829	373 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	YEH1	Q07804	573 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	CBP2	P03874	630 aa	Predicted RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	CDC23	P16522	626 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	APA2	P22108	325 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	SAC1	P32368	623 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	TFA2	P36145	328 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	YHR033W	P38690	423 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	YER010C	P40011	234 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	IRC24	P40580	263 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	SNO2	P53823	222 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	TRM12	Q04235	462 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	GAD1	Q04792	585 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	DIC1	Q06143	298 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	SDO1	Q07953	250 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	MUM3	Q08750	479 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	BEM2	P39960	2167 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	NFT1	P0CE68	1218 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	MSB1	P21339	1137 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	ATP12	P22135	325 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	PTP1	P25044	335 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	RNQ1	P25367	405 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	UTR2	P32623	467 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	GLY1	P37303	387 aa	Known RBP	4.69	□□□□□ -1.66
NUP116	YMR047C	SMF1	P38925	575 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	SSN3	P39073	555 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	TIM17	P39515	158 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	AIM2	P39721	246 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	YIL166C	P40445	542 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	IMA1	P53051	589 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	RMR1	P53060	241 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	VAC7	P53950	1165 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	TRS31	Q03337	283 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	CDC123	Q05791	360 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	PDR8	Q06149	701 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.69	□□□□□ -1.66	not detected
NUP116	YMR047C	IRC13	Q08630	104 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	FRE3	Q08905	711 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	BAG7	Q12128	409 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	MDM12	Q92328	271 aa		4.69	□□□□□ -1.66
NUP116	YMR047C	NSP1	P14907	823 aa	Known RBP	4.68	□□□□□ -1.66
NUP116	YMR047C	BAS1	P22035	811 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	URA10	P30402	227 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	ATP7	P30902	174 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	LHP1	P33399	275 aa	Known RBP	4.68	□□□□□ -1.66
NUP116	YMR047C	NIC96	P34077	839 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	SEA4	P38164	1038 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	ACO2	P39533	789 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	YEN1	P40028	759 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	NAS2	P40555	220 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	PAC11	P40960	533 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	LSM1	P47017	172 aa	Known RBP	4.68	□□□□□ -1.66
NUP116	YMR047C	ARC35	P53731	342 aa	Known RBP	4.68	□□□□□ -1.66
NUP116	YMR047C	KAP120	Q02932	1032 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	SRL4	Q03085	281 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	SNX41	Q04053	625 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	RCO1	Q04779	684 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	YLR345W	Q06137	509 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	PUS7	Q08647	676 aa	Known RBP	4.68	□□□□□ -1.66
NUP116	YMR047C	DIN7	Q12086	430 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	RRP42	Q12277	265 aa	Predicted RBP	4.68	□□□□□ -1.66
NUP116	YMR047C	GCN4	P03069	281 aa		4.68	□□□□□ -1.66
NUP116	YMR047C	GCD1	P09032	578 aa	Predicted RBP	4.68	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 34.2 ms