RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	BI3	Q9ZZW7	517 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	ILV6	P25605	309 aa	Known RBP	3.79	□□□□□ -1.8
UBX5	YDR330W	TMT1	P32643	299 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	MMS4	P38257	691 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	VHC1	P38329	1120 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	ARN1	P38731	627 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	CAK1	P43568	368 aa	Predicted RBP	3.79	□□□□□ -1.8
UBX5	YDR330W	URB2	P47108	1174 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	UBP8	P50102	471 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	YTP1	P53584	459 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	RSM23	Q01163	450 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	PIG1	Q06216	648 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	SGT2	Q12118	346 aa	Known RBP	3.79	□□□□□ -1.8
UBX5	YDR330W	TY3A-G	Q12173	290 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	TY3A-I	Q99219	290 aa		3.79	□□□□□ -1.8
UBX5	YDR330W	YER145C-A	A0A023PYF4	145 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	PUT2	P07275	575 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	YML002W	P0CF17	737 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	ASP3-2	P0CX77	362 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	ASP3-3	P0CX78	362 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	ASP3-4	P0CX79	362 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	ASP3-1	P0CZ17	362 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	POX1	P13711	748 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	CBF1	P17106	351 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	CDC10	P25342	322 aa	Known RBP	3.78	□□□□□ -1.8
UBX5	YDR330W	ADY2	P25613	283 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	HXT3	P32466	567 aa	Known RBP	3.78	□□□□□ -1.8
UBX5	YDR330W	GYP6	P32806	458 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	RGT1	P32862	1170 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	RPC37	P36121	282 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	YMR134W	P40207	237 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	SEC28	P40509	296 aa	Known RBP	3.78	□□□□□ -1.8
UBX5	YDR330W	QRI1	P43123	477 aa	Known RBP	3.78	□□□□□ -1.8
UBX5	YDR330W	BPL1	P48445	690 aa	Predicted RBP	3.78	□□□□□ -1.8
UBX5	YDR330W	YGR126W	P53274	230 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	TOF2	Q02208	771 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	OAZ1	Q02803	292 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	SWF1	Q04629	336 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	IVY1	Q04934	453 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	RBS1	Q05672	457 aa	Known RBP	3.78	□□□□□ -1.8
UBX5	YDR330W	ATG26	Q06321	1198 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	FMP45	Q07651	309 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	SHS1	Q07657	551 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	NCA2	Q12374	616 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	ISN1	Q99312	450 aa		3.78	□□□□□ -1.8
UBX5	YDR330W	RAD10	P06838	210 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	RPL31B	P0C2H9	113 aa	Known RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	MAS2	P11914	482 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	HEM15	P16622	393 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	TRX1	P22217	103 aa	Known RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	GAC1	P28006	793 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	YME2	P32843	850 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	SKG6	P32900	734 aa	Predicted RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	LOS1	P33418	1100 aa	Predicted RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	HOT13	P36078	116 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	TUL1	P36096	758 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	YSW1	P38280	609 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	NTC20	P38302	140 aa	Predicted RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	PCA1	P38360	1216 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	YJL107C	P42947	387 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	SNZ3	P43545	298 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	IRC7	P43623	340 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	ALK1	P43633	760 aa	Known RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	TAX4	P47030	604 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	LYS20	P48570	428 aa	Known RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	HOP2	P53187	214 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	SNZ2	P53824	298 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	SHR3	Q02774	210 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	MSC1	Q03104	513 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	RPS10A	Q08745	105 aa	Predicted RBP	3.77	□□□□□ -1.81
UBX5	YDR330W	SUT2	Q12286	268 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	YLR111W	Q12528	110 aa		3.77	□□□□□ -1.81
UBX5	YDR330W	COX4	P04037	155 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	RPL4A	P10664	362 aa	Known RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	PRP16	P15938	1071 aa	Predicted RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	SRV2	P17555	526 aa	Known RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	NUP1	P20676	1076 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	ERV1	P27882	189 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	PRR1	P28708	518 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	RML2	P32611	393 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	MRP4	P32902	394 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	DUG2	P38149	878 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	POP4	P38336	279 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	DSN1	P40568	576 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	SAD1	P43589	448 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	RPS10B	P46784	105 aa	Known RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	RPL4B	P49626	362 aa	Known RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	MND1	P53102	219 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	YGR016W	P53209	190 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	ATP23	P53722	227 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	ASI1	P54074	624 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	PEX25	Q02969	394 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	TAF9	Q05027	157 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	RRP45	Q05636	305 aa	Known RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	KAP95	Q06142	861 aa	Known RBP	3.76	□□□□□ -1.81
UBX5	YDR330W	ORM2	Q06144	216 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	TAF10	Q12030	206 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	YDR018C	Q12185	396 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	GPM3	Q12326	303 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	RRD2	Q12461	358 aa		3.76	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 27.5 ms