RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W SLY1P22213 666 aa0.67□□□□□ -2.3
PRP42YDR235W PPH22P23595 377 aa0.67□□□□□ -2.3
PRP42YDR235W ITR1P30605 584 aa0.67□□□□□ -2.3
PRP42YDR235W GPI10P30777 616 aa0.67□□□□□ -2.3
PRP42YDR235W APE2P32454 952 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W PRP21P32524 280 aaPredicted RBP0.67□□□□□ -2.3
PRP42YDR235W ECM25P32525 599 aa0.67□□□□□ -2.3
PRP42YDR235W IME2P32581 645 aa0.67□□□□□ -2.3
PRP42YDR235W CYS4P32582 507 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W GYP6P32806 458 aa0.67□□□□□ -2.3
PRP42YDR235W NIP100P33420 868 aa0.67□□□□□ -2.3
PRP42YDR235W DTR1P38125 572 aa0.67□□□□□ -2.3
PRP42YDR235W HXT14P42833 540 aa0.67□□□□□ -2.3
PRP42YDR235W VTC2P43585 828 aa0.67□□□□□ -2.3
PRP42YDR235W ECM27P47144 725 aa0.67□□□□□ -2.3
PRP42YDR235W YGR018CP53211 109 aa0.67□□□□□ -2.3
PRP42YDR235W KTR5P53966 522 aaPredicted RBP0.67□□□□□ -2.3
PRP42YDR235W SVL3Q03088 825 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W TAP42Q04372 366 aa0.67□□□□□ -2.3
PRP42YDR235W SNX3Q08826 162 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W RIM20Q12033 661 aa0.67□□□□□ -2.3
PRP42YDR235W IZH2Q12442 317 aa0.67□□□□□ -2.3
PRP42YDR235W HIS4P00815 799 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W ARG4P04076 463 aaPredicted RBP0.67□□□□□ -2.3
PRP42YDR235W ARG3P05150 338 aa0.67□□□□□ -2.3
PRP42YDR235W SPS4P09937 338 aa0.67□□□□□ -2.3
PRP42YDR235W MAS2P11914 482 aa0.67□□□□□ -2.3
PRP42YDR235W RPL3P14126 387 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W SNT1P25357 1226 aa0.67□□□□□ -2.3
PRP42YDR235W MUD1P32605 298 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W IES6P32617 166 aa0.67□□□□□ -2.3
PRP42YDR235W SEC66P33754 206 aa0.67□□□□□ -2.3
PRP42YDR235W VHC1P38329 1120 aa0.67□□□□□ -2.3
PRP42YDR235W LYS1P38998 373 aaRIP-Chip data0.67□□□□□ -2.3not detected
PRP42YDR235W CCT2P39076 527 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W ESL1P40456 1118 aa0.67□□□□□ -2.3
PRP42YDR235W ARF3P40994 183 aaRIP-Chip data0.67□□□□□ -2.3not detected
PRP42YDR235W TFG2P41896 400 aaPredicted RBP0.67□□□□□ -2.3
PRP42YDR235W ATP22P50273 684 aaPredicted RBP0.67□□□□□ -2.3
PRP42YDR235W TIM10P87108 93 aa0.67□□□□□ -2.3
PRP42YDR235W YMR181CQ03231 154 aa0.67□□□□□ -2.3
PRP42YDR235W GIR2Q03768 265 aaPredicted RBP0.67□□□□□ -2.3
PRP42YDR235W RQC1Q05468 723 aaKnown RBP0.67□□□□□ -2.3
PRP42YDR235W REX4Q08237 289 aa0.67□□□□□ -2.3
PRP42YDR235W YLR278CQ05854 1341 aa0.66□□□□□ -2.3
PRP42YDR235W ADH1P00330 348 aaKnown RBP0.66□□□□□ -2.3
PRP42YDR235W COX4P04037 155 aa0.66□□□□□ -2.3
PRP42YDR235W MET17P06106 444 aa0.66□□□□□ -2.3
PRP42YDR235W GPH1P06738 902 aaKnown RBP0.66□□□□□ -2.3
PRP42YDR235W CBP6P07253 162 aaPredicted RBP0.66□□□□□ -2.3
PRP42YDR235W SPO7P18410 259 aa0.66□□□□□ -2.3
PRP42YDR235W IMP2'P32351 346 aa0.66□□□□□ -2.3
PRP42YDR235W DPH2P32461 534 aa0.66□□□□□ -2.3
PRP42YDR235W RML2P32611 393 aa0.66□□□□□ -2.3
PRP42YDR235W RTC2P38279 296 aa0.66□□□□□ -2.3
PRP42YDR235W OTU2P38747 307 aaKnown RBP0.66□□□□□ -2.3
PRP42YDR235W YHR054CP38780 354 aa0.66□□□□□ -2.3
PRP42YDR235W MET18P40469 1032 aa0.66□□□□□ -2.3
PRP42YDR235W SAS2P40963 338 aa0.66□□□□□ -2.3
PRP42YDR235W VMA13P41807 478 aaKnown RBP0.66□□□□□ -2.3
PRP42YDR235W HMS2P47175 358 aa0.66□□□□□ -2.3
PRP42YDR235W PGU1P47180 361 aa0.66□□□□□ -2.3
PRP42YDR235W YNR048WP53740 393 aa0.66□□□□□ -2.3
PRP42YDR235W ADA2Q02336 434 aa0.66□□□□□ -2.3
PRP42YDR235W BET5Q03630 159 aa0.66□□□□□ -2.3
PRP42YDR235W LIP2Q06005 328 aa0.66□□□□□ -2.3
PRP42YDR235W IMH1Q06704 911 aaKnown RBP0.66□□□□□ -2.3
PRP42YDR235W SIL1Q08199 421 aa0.66□□□□□ -2.3
PRP42YDR235W ORT1Q12375 292 aa0.66□□□□□ -2.3
PRP42YDR235W RAX2Q12465 1220 aa0.66□□□□□ -2.3
PRP42YDR235W SAL1D6W196 494 aa0.65□□□□□ -2.31
PRP42YDR235W RIP1P08067 215 aa0.65□□□□□ -2.31
PRP42YDR235W NAM2P11325 894 aa0.65□□□□□ -2.31
PRP42YDR235W SRV2P17555 526 aaKnown RBP0.65□□□□□ -2.31
PRP42YDR235W CLN1P20437 546 aa0.65□□□□□ -2.31
PRP42YDR235W AAT2P23542 418 aaKnown RBP0.65□□□□□ -2.31
PRP42YDR235W HXT3P32466 567 aaKnown RBP0.65□□□□□ -2.31
PRP42YDR235W HIR2P32480 875 aa0.65□□□□□ -2.31
PRP42YDR235W SMF1P38925 575 aa0.65□□□□□ -2.31
PRP42YDR235W YJR011CP47086 261 aaPredicted RBP0.65□□□□□ -2.31
PRP42YDR235W MDE1P47095 244 aa0.65□□□□□ -2.31
PRP42YDR235W AZR1P50080 613 aa0.65□□□□□ -2.31
PRP42YDR235W PHB2P50085 310 aa0.65□□□□□ -2.31
PRP42YDR235W MNP1P53163 194 aaPredicted RBP0.65□□□□□ -2.31
PRP42YDR235W JJJ1P53863 590 aa0.65□□□□□ -2.31
PRP42YDR235W NUP116Q02630 1113 aa0.65□□□□□ -2.31
PRP42YDR235W OAZ1Q02803 292 aa0.65□□□□□ -2.31
PRP42YDR235W SYF1Q04048 859 aaPredicted RBP0.65□□□□□ -2.31
PRP42YDR235W VTA1Q06263 330 aa0.65□□□□□ -2.31
PRP42YDR235W NDE2Q07500 545 aa0.65□□□□□ -2.31
PRP42YDR235W SGT1Q08446 395 aa0.65□□□□□ -2.31
PRP42YDR235W MED1Q12321 566 aa0.65□□□□□ -2.31
PRP42YDR235W GRX6Q12438 231 aa0.65□□□□□ -2.31
PRP42YDR235W ILV5P06168 395 aaKnown RBP0.64□□□□□ -2.31
PRP42YDR235W MRP7P12687 371 aa0.64□□□□□ -2.31
PRP42YDR235W SEC63P14906 663 aa0.64□□□□□ -2.31
PRP42YDR235W CKA1P15790 372 aa0.64□□□□□ -2.31
PRP42YDR235W ROX1P25042 368 aa0.64□□□□□ -2.31
PRP42YDR235W CTR86P25355 563 aa0.64□□□□□ -2.31
PRP42YDR235W RHB1P25378 209 aa0.64□□□□□ -2.31
Retrieved 100 of 5,963 RNA–protein pairs in 43.1 ms