RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	SSH4	P32343	579 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	VMA6	P32366	345 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	SSE2	P32590	693 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	MUD1	P32605	298 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	SOF1	P33750	489 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	YPK3	P38070	525 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	SCO2	P38072	301 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	PDX3	P38075	228 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	KAP104	P38217	918 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	FAA2	P39518	744 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	FMP10	P40098	244 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	GAT1	P43574	510 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	FAR3	P46671	204 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	GLO1	P50107	326 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	PGA2	P53903	129 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	TIM8	P57744	87 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	PFA5	Q03289	374 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	RSM28	Q03430	361 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	TVP15	Q03860	143 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	AIM33	Q04516	312 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	SSQ1	Q05931	657 aa	Predicted RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	YLR455W	Q06188	304 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	ASA1	Q06822	443 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	SYO1	Q07395	620 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	YET3	Q07451	203 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	PSR1	Q07800	427 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	FRE3	Q08905	711 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	RGT2	Q12300	763 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	ILV1	P00927	576 aa	Known RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	YER190C-B	P0CX94	160 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YEL077W-A	P0CX95	160 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YGR296C-B	P0CX96	160 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YPL283W-B	P0CX97	160 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YPR204C-A	P0CX98	160 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	NMT1	P14743	455 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	MSS116	P15424	664 aa	Known RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	STF2	P16965	84 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	SAN1	P22470	610 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	CMK2	P22517	447 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	RER1	P25560	188 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	URA7	P28274	579 aa	Known RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	TFB1	P32776	642 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	PFF1	P38244	976 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YBR285W	P38354	144 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	ECM10	P39987	644 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	TPA1	P40032	644 aa	Known RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	SER3	P40054	469 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	LCB2	P40970	561 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	MSS2	P40990	351 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YFR020W	P43600	232 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	GLG2	P47011	380 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	RMR1	P53060	241 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	PRO2	P54885	456 aa	Known RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	SYF1	Q04048	859 aa	Predicted RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	YMR111C	Q04461	462 aa	Predicted RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	IVY1	Q04934	453 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	ADE13	Q05911	482 aa	Known RBP	4.08	□□□□□ -1.76
HSP42	YDR171W	GEP3	Q08622	556 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	NUS1	Q12063	375 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YOR342C	Q12182	319 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	YDR018C	Q12185	396 aa		4.08	□□□□□ -1.76
HSP42	YDR171W	CHO1	P08456	276 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	CDC24	P11433	854 aa	Predicted RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	SNF4	P12904	322 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	LCB1	P25045	558 aa	Known RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	SEC1	P30619	724 aa	Known RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	ATP7	P30902	174 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	GYP6	P32806	458 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	VPS21	P36017	210 aa	Known RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	ALY1	P36117	915 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	RIM2	P38127	377 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	APE4	P38821	490 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	SEC31	P38968	1273 aa	Known RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	SEO1	P39709	593 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	AVT6	P40074	448 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	SEC24	P40482	926 aa	Known RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	CHS6	P40955	746 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	PAC11	P40960	533 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	IME4	P41833	600 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	ATP22	P50273	684 aa	Predicted RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	LSB1	P53281	241 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	YGR266W	P53326	701 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	SCW4	P53334	386 aa	Known RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	MEP3	P53390	489 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	RPL15B	P54780	204 aa	Predicted RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	SKI8	Q02793	397 aa	Predicted RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	IRC4	Q03036	179 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	ABZ2	Q03266	374 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	GAL83	Q04739	417 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	KEL3	Q08979	651 aa	Predicted RBP	4.07	□□□□□ -1.76
HSP42	YDR171W	RCN2	Q12044	265 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	ATP16	Q12165	160 aa		4.07	□□□□□ -1.76
HSP42	YDR171W	RAD10	P06838	210 aa		4.06	□□□□□ -1.76
HSP42	YDR171W	IMA3	P0CW40	589 aa		4.06	□□□□□ -1.76
HSP42	YDR171W	IMA4	P0CW41	589 aa		4.06	□□□□□ -1.76
HSP42	YDR171W	GPA2	P10823	449 aa		4.06	□□□□□ -1.76
HSP42	YDR171W	MRP13	P12686	339 aa		4.06	□□□□□ -1.76
HSP42	YDR171W	FBA1	P14540	359 aa	Known RBP	4.06	□□□□□ -1.76
HSP42	YDR171W	ACH1	P32316	526 aa		4.06	□□□□□ -1.76
HSP42	YDR171W	MCM10	P32354	571 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 26.1 ms