RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	PIG2	P40187	538 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	GAT2	P40209	560 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	CDC1	P40986	491 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	SPG5	P42933	373 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	BNA6	P43619	295 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	MUP1	P50276	574 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	ATG4	P53867	494 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	MMT1	Q03218	510 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	MED2	Q12124	431 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	UFD4	P33202	1483 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	TDH2	P00358	332 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	ARG4	P04076	463 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	RAD52	P06778	471 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	GDH1	P07262	454 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	PEP5	P12868	1029 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	YPK2	P18961	677 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	PPZ1	P26570	692 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	ZIP1	P31111	875 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	RGT1	P32862	1170 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	COS9	P36034	407 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	RTC3	P38804	111 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	FET3	P38993	636 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	YHB1	P39676	399 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	YIR016W	P40572	265 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	PHO86	P46956	311 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	YDL186W	P48568	277 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	UBP8	P50102	471 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	RMR1	P53060	241 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	NMA2	P53204	395 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	YTP1	P53584	459 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	ESBP6	P53918	673 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	RXT3	Q07458	294 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	ADH2	P00331	348 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	GPH1	P06738	902 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	SPS4	P09937	338 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	THR4	P16120	514 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	DBR1	P24309	405 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	GSY2	P27472	705 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	ATP11	P32453	318 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
CDC9	YDL164C	PLB1	P39105	664 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	SAP1	P39955	897 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	YRB2	P40517	327 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	SAS2	P40963	338 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	ERG10	P41338	398 aa	Known RBP	4.12	□□□□□ -1.75
CDC9	YDL164C	RTC4	P53850	401 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	BET4	Q00618	327 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	ARR2	Q06597	130 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	GRE1	Q08969	168 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	YKL033W-A	Q86ZR7	236 aa		4.12	□□□□□ -1.75
CDC9	YDL164C	YER145C-A	A0A023PYF4	145 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	ADE1	P27616	306 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	CIN8	P27895	1000 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	OCT1	P35999	772 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	SLX1	P38324	304 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	VBA2	P38358	474 aa	Known RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	YNR014W	P53719	212 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	MTQ1	P53944	314 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	RSM23	Q01163	450 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	FUS2	Q05670	677 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	YDL057W	Q07379	328 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	TSR1	Q07381	788 aa	Known RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	NOP12	Q08208	459 aa	Known RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	YOR365C	Q08844	703 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	SRN2	Q99176	213 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	MAS1	P10507	462 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	DEG1	P31115	442 aa	Known RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
CDC9	YDL164C	MSN2	P33748	704 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	VHC1	P38329	1120 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	PRP39	P39682	629 aa	Known RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	YEL020C	P39994	560 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	ERG26	P53199	349 aa	Known RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	IST1	P53843	298 aa	Predicted RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	RAX1	Q08760	435 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	USV1	Q12132	391 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	MED4	Q12343	284 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	PRP46	Q12417	451 aa	Predicted RBP	4.11	□□□□□ -1.75
CDC9	YDL164C	STH1	P32597	1359 aa		4.11	□□□□□ -1.75
CDC9	YDL164C	OPI3	P05375	206 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	RHO1	P06780	209 aa	Known RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	ATP1	P07251	545 aa	Known RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	RPL12A	P0CX53	165 aa	Known RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	RPL12B	P0CX54	165 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	GPI12	P23797	304 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	ACH1	P32316	526 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	YIR042C	P40586	236 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	RIM8	P53179	542 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	YGR151C	P53287	111 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
CDC9	YDL164C	SLT2	Q00772	484 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	GTO3	Q04806	366 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	YLR283W	Q05867	314 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	TDA6	Q06466	467 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	RAD34	Q06665	692 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	THI72	Q08579	599 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	PDE2	P06776	526 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	TOA2	P32774	122 aa		4.1	□□□□□ -1.75
CDC9	YDL164C	SOF1	P33750	489 aa	Known RBP	4.1	□□□□□ -1.75
CDC9	YDL164C	RPF2	P36160	344 aa	Known RBP	4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms