RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W RAD57P25301 460 aa1.15□□□□□ -2.22
CDC39YCR093W DAL2P25335 343 aa1.15□□□□□ -2.22
CDC39YCR093W HMX1P32339 317 aa1.15□□□□□ -2.22
CDC39YCR093W ATO2P32907 282 aa1.15□□□□□ -2.22
CDC39YCR093W TIF3P34167 436 aaKnown RBP1.15□□□□□ -2.22
CDC39YCR093W PCH2P38126 564 aa1.15□□□□□ -2.22
CDC39YCR093W RIB5P38145 238 aa1.15□□□□□ -2.22
CDC39YCR093W OSH3P38713 996 aaKnown RBP1.15□□□□□ -2.22
CDC39YCR093W FHL1P39521 936 aa1.15□□□□□ -2.22
CDC39YCR093W YDR541CQ03049 344 aa1.15□□□□□ -2.22
CDC39YCR093W MSL5Q12186 476 aaKnown RBP RIP-Chip data1.15□□□□□ -2.22not detected
CDC39YCR093W JID1Q12350 301 aa1.15□□□□□ -2.22
CDC39YCR093W SNU66Q12420 587 aaPredicted RBP1.15□□□□□ -2.22
CDC39YCR093W TEF1P02994 458 aaKnown RBP1.15□□□□□ -2.23
CDC39YCR093W OPI1P21957 404 aa1.15□□□□□ -2.23
CDC39YCR093W DEG1P31115 442 aaKnown RBP1.15□□□□□ -2.23
CDC39YCR093W ANP1P32629 500 aa1.15□□□□□ -2.23
CDC39YCR093W SPT8P38915 602 aa1.15□□□□□ -2.23
CDC39YCR093W MET30P39014 640 aa1.15□□□□□ -2.23
CDC39YCR093W HIT1P46973 164 aa1.15□□□□□ -2.23
CDC39YCR093W YHC3P47040 408 aa1.15□□□□□ -2.23
CDC39YCR093W YJR011CP47086 261 aaPredicted RBP1.15□□□□□ -2.23
CDC39YCR093W YNL146WP53906 100 aa1.15□□□□□ -2.23
CDC39YCR093W RSN1Q03516 953 aa1.15□□□□□ -2.23
CDC39YCR093W CAC2Q04199 468 aa1.15□□□□□ -2.23
CDC39YCR093W STP3Q05937 343 aa1.15□□□□□ -2.23
CDC39YCR093W DCS1Q06151 350 aa1.15□□□□□ -2.23
CDC39YCR093W IRC25Q07951 179 aa1.15□□□□□ -2.23
CDC39YCR093W TPT1Q12272 230 aaKnown RBP1.15□□□□□ -2.23
CDC39YCR093W PMR1P13586 950 aa1.15□□□□□ -2.23
CDC39YCR093W CTA1P15202 515 aa1.15□□□□□ -2.23
CDC39YCR093W EFB1P32471 206 aaKnown RBP1.15□□□□□ -2.23
CDC39YCR093W DAD2P36162 133 aa1.15□□□□□ -2.23
CDC39YCR093W BMT2P38278 337 aa1.15□□□□□ -2.23
CDC39YCR093W LSM12P38828 187 aaKnown RBP1.15□□□□□ -2.23
CDC39YCR093W YJL070CP40361 888 aa1.15□□□□□ -2.23
CDC39YCR093W YIR014WP40570 242 aa1.15□□□□□ -2.23
CDC39YCR093W LCL3P53153 274 aa1.15□□□□□ -2.23
CDC39YCR093W INN1P53901 409 aa1.15□□□□□ -2.23
CDC39YCR093W MTQ1P53944 314 aa1.15□□□□□ -2.23
CDC39YCR093W STD1Q02794 444 aa1.15□□□□□ -2.23
CDC39YCR093W OSW1Q08692 278 aa1.15□□□□□ -2.23
CDC39YCR093W LAS17Q12446 633 aa1.15□□□□□ -2.23
CDC39YCR093W CBS2P14905 389 aa1.15□□□□□ -2.23
CDC39YCR093W RIM1P32445 135 aaKnown RBP1.15□□□□□ -2.23
CDC39YCR093W APE4P38821 490 aa1.15□□□□□ -2.23
CDC39YCR093W MTC6P38849 526 aa1.15□□□□□ -2.23
CDC39YCR093W PEX22P39718 180 aa1.15□□□□□ -2.23
CDC39YCR093W ATM1P40416 690 aa1.15□□□□□ -2.23
CDC39YCR093W VHS2P40463 436 aa1.15□□□□□ -2.23
CDC39YCR093W YIL060WP40519 144 aa1.15□□□□□ -2.23
CDC39YCR093W HST1P53685 503 aa1.15□□□□□ -2.23
CDC39YCR093W BET4Q00618 327 aa1.15□□□□□ -2.23
CDC39YCR093W YDR387CQ04162 555 aa1.15□□□□□ -2.23
CDC39YCR093W YMR111CQ04461 462 aaPredicted RBP1.15□□□□□ -2.23
CDC39YCR093W SNA4Q07549 140 aa1.15□□□□□ -2.23
CDC39YCR093W GPA1P08539 472 aa1.14□□□□□ -2.23
CDC39YCR093W PRP2P20095 876 aaPredicted RBP1.14□□□□□ -2.23
CDC39YCR093W VPS1P21576 704 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W RBK1P25332 333 aa1.14□□□□□ -2.23
CDC39YCR093W LSB5P25369 354 aa1.14□□□□□ -2.23
CDC39YCR093W RPS2P25443 254 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W YCR100CP25606 316 aa1.14□□□□□ -2.23
CDC39YCR093W ECM15P35195 104 aa1.14□□□□□ -2.23
CDC39YCR093W YPT10P38146 199 aa1.14□□□□□ -2.23
CDC39YCR093W ANS1P38832 159 aa1.14□□□□□ -2.23
CDC39YCR093W PTH1P38876 190 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W PHO90P39535 881 aa1.14□□□□□ -2.23
CDC39YCR093W MIT1P40002 666 aa1.14□□□□□ -2.23
CDC39YCR093W CWC25P53854 179 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W HEF3P53978 1044 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W MLH2Q07980 695 aa1.14□□□□□ -2.23
CDC39YCR093W ICT1Q12385 394 aa1.14□□□□□ -2.23
CDC39YCR093W TFC7Q12415 435 aa1.14□□□□□ -2.23
CDC39YCR093W EAF3Q12432 401 aa1.14□□□□□ -2.23
CDC39YCR093W PCD1Q12524 340 aa1.14□□□□□ -2.23
CDC39YCR093W BAR1P12630 587 aa1.14□□□□□ -2.23
CDC39YCR093W CPR3P25719 182 aa1.14□□□□□ -2.23
CDC39YCR093W MRPL40P36534 297 aa1.14□□□□□ -2.23
CDC39YCR093W INM1P38710 295 aa1.14□□□□□ -2.23
CDC39YCR093W MAF1P41910 395 aa1.14□□□□□ -2.23
CDC39YCR093W GAT1P43574 510 aa1.14□□□□□ -2.23
CDC39YCR093W YFR020WP43600 232 aa1.14□□□□□ -2.23
CDC39YCR093W YFR057WP43625 151 aa1.14□□□□□ -2.23
CDC39YCR093W YIP1P53039 248 aa1.14□□□□□ -2.23
CDC39YCR093W YPR003CP53394 754 aa1.14□□□□□ -2.23
CDC39YCR093W KTR6P54070 446 aa1.14□□□□□ -2.23
CDC39YCR093W LGE1Q02796 332 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W MCH1Q07376 486 aa1.14□□□□□ -2.23
CDC39YCR093W PCL8Q08966 492 aa1.14□□□□□ -2.23
CDC39YCR093W URB1P34241 1764 aaKnown RBP1.14□□□□□ -2.23
CDC39YCR093W SCEIP03882 235 aa1.14□□□□□ -2.23
CDC39YCR093W MET17P06106 444 aa1.14□□□□□ -2.23
CDC39YCR093W CDC21P06785 304 aa1.14□□□□□ -2.23
CDC39YCR093W TUL1P36096 758 aa1.14□□□□□ -2.23
CDC39YCR093W RPA34P47006 233 aaPredicted RBP1.14□□□□□ -2.23
CDC39YCR093W SCS3P53012 380 aa1.14□□□□□ -2.23
CDC39YCR093W MRN1Q08925 612 aaKnown RBP RIP-Chip data1.14□□□□□ -2.23not detected
CDC39YCR093W CSR2Q12734 1121 aa1.14□□□□□ -2.23
CDC39YCR093W APA1P16550 321 aaKnown RBP1.14□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 57.7 ms