RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KCTD17	Q8N5Z5	321 aa		13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	PNMA5	Q96PV4	448 aa		13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	NT5C3A	Q9H0P0	336 aa		13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	ZFYVE28	Q9HCC9	887 aa		13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	TUBE1	Q9UJT0	475 aa		13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	IVNS1ABP	Q9Y6Y0	642 aa		13.22	□□□□□ -0.29
CLN6-223	ENST00000637823	FSD2	A1L4K1	749 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	FOXN1	O15353	648 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	DHX15	O43143	795 aa	Known RBP	13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	GTPBP6	O43824	516 aa	Predicted RBP	13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	SMC2	O95347	1197 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	MYL1	P05976	194 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	RPA1	P27694	616 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	ICAM3	P32942	547 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	AFM	P43652	599 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	APLP1	P51693	650 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	GNPTAB	Q3T906	1256 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	TMEM119	Q4V9L6	283 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	NAALADL2	Q58DX5	795 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	HAUS3	Q68CZ6	603 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	B3GNT9	Q6UX72	402 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	PLIN2	Q99541	437 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	NUDT12	Q9BQG2	462 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	CREBZF	Q9NS37	354 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	KBTBD4	Q9NVX7	518 aa		13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	MYH9	P35579	1960 aa	Known RBP	13.21	□□□□□ -0.29
CLN6-223	ENST00000637823	MGAM	O43451	1857 aa		13.21	□□□□□ -0.3
CLN6-223	ENST00000637823	ASTN1	O14525	1302 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	LRRC37A2	A6NM11	1700 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	ASB14	A6NK59	587 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	RASSF10	A6NK89	507 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	SPATA31C2	B4DYI2	1134 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	TLR2	O60603	784 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	RGS20	O76081	388 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	CAVIN2	O95810	425 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	PGK2	P07205	417 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	MUT	P22033	750 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	SARS	P49591	514 aa	Known RBP	13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	AMPD3	Q01432	767 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	NOG	Q13253	232 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	ITGB3BP	Q13352	177 aa	Predicted RBP	13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	EPHA7	Q15375	998 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	STX1A	Q16623	288 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	NT5DC1	Q5TFE4	455 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	CYP4F22	Q6NT55	531 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	C17orf99	Q6UX52	265 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	SV2B	Q7L1I2	683 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	PLEKHH3	Q7Z736	793 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	GRAMD1C	Q8IYS0	662 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	SPATA20	Q8TB22	786 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	MORC4	Q8TE76	937 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	ERCC4	Q92889	916 aa	Predicted RBP	13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	SMARCE1	Q969G3	411 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	LRRC27	Q9C0I9	530 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	UNC45A	Q9H3U1	944 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	TUFT1	Q9NNX1	390 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	ANO10	Q9NW15	660 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	CPA4	Q9UI42	421 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	PCDHA5	Q9Y5H7	936 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	ZNF236	Q9UL36	1845 aa		13.2	□□□□□ -0.3
CLN6-223	ENST00000637823	NFASC	O94856	1347 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	SLC15A5	A6NIM6	579 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	EML1	O00423	815 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	ATP9A	O75110	1047 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	MED24	O75448	989 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	ALDH1A1	P00352	501 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	PRR29	P0C7W0	189 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	SPATA31C1	P0DKV0	1188 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	ADORA2A	P29274	412 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	NLRP12	P59046	1061 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	KRT76	Q01546	638 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	DPYD	Q12882	1025 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	SEMA3F	Q13275	785 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	ZNF792	Q3KQV3	632 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	GPR142	Q7Z601	462 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	CATSPER3	Q86XQ3	398 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	NEK9	Q8TD19	979 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	RAD54L	Q92698	747 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	FGD4	Q96M96	766 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	GSDMA	Q96QA5	445 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	MTR	Q99707	1265 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	HSD17B14	Q9BPX1	270 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	SENP7	Q9BQF6	1050 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	BLOC1S4	Q9NUP1	217 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	TCEAL9	Q9UHQ7	104 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	KIAA1024	Q9UPX6	916 aa		13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	DIS3	Q9Y2L1	958 aa	Known RBP	13.19	□□□□□ -0.3
CLN6-223	ENST00000637823	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	CA12	O43570	354 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	COBL	O75128	1261 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	TGFB3	P10600	412 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	KCNA2	P16389	499 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	SFN	P31947	248 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	GRB14	Q14449	540 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	ECM1	Q16610	540 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	KCNV1	Q6PIU1	500 aa		13.18	□□□□□ -0.3

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